On Thu, Feb 12, 2009 at 4:55 PM, Mark Robinson wrote:
>
> Hi Sun.
>
> One of the handy features of aroma.affymetrix is that it pulls a lot
> of information from the directories in which files reside (e.g.
> platform, dataset name, etc).
>
> If you are on unix/mac osx, you can use symbolic links for this.
>
> For example, everything in your ./rawData/MYPLATFORM/MYDATASET
Correction:
./rawData///
> directory would be a link to the location on disk where the file
> resides. You could probably even write a script to create all the
> symbolic links from the list of full pathnames in your text file ...
>
> I don't know how to do this on windows, but presumably there is
> something similar.
You can use Windows *.lnk Shortcuts. Not sure if it will work
correctly for files, but should work for directories.
/Henrik
>
> HTH,
> Mark
>
> On 13/02/2009, at 11:24 AM, Wukong Sun wrote:
>
>> Dear Dr. Bengtsson:
>>
>>
>> I am wondering whether aroma-affymetrix can read in CEL files that
>> are scattered in several directories.
>> For example, the user may want to provide a text file specifying the
>> full paths of CEL files.
>> The reason is that I want to process these CEL files together,
>> however I don't want to copy them to one folder.
>>
>> Thanks.
>>
>> >
>>
>
> --
> Mark Robinson
> Epigenetics Laboratory, Garvan
> Bioinformatics Division, WEHI
> e: m.robin...@garvan.org.au
> e: mrobin...@wehi.edu.au
> p: +61 (0)3 9345 2628
> f: +61 (0)3 9347 0852
> --
>
>
>
>
>
> >
>
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