Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting
Hi Geoff! As I said, we are 3 people having the same problem; same Mac's and same version of Avogadro. I got suspicious to why Avogadro on the Mac desktop at work (which I use all the time) is stable and doesn't crash when copying coordinates from Avogadro into an editor. That version is 1.0.3. So, I reinstalled that version on my Mac laptop at home. Problem fixed! If you tell me how to retrieve Apple's crash dialog I am happy to help! Fredrik From: geoff.hutchi...@gmail.com Date: Thu, 4 Apr 2013 19:09:35 -0400 To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting This is when running Avogadro 1.1.0 on a Mac OS X running 10.6.8. Huh. I don't have a 10.6.8 machine around to test. If I send you a debug version can you send me back the text that appears in Apple's crash dialog? Thanks very much,-Geoff -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting
I'm using Mac OS X 10.6.8 From: geoff.hutchi...@gmail.com Date: Fri, 5 Apr 2013 19:17:28 -0400 To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting Fred, I can't remember. Are you also using Mac OS X 10.6.x? I'm wondering if, now that Avogadro 1.1 is compiled on 10.7, if I'm missing some backwards-compatibility issues. Thanks very much, -Geoff -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting
Hi! We are several users of Avogadro 1.0.3 running the application on Mac OS-X 10.7. It keeps crashing every time you copy-paste the coordinates into some other editor, vi, emacs, Word.. or anything. Restarting the computer doesn't help. Reinstallation doesn't help. What to do? Fredrik -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting
Thanks! We will try it out this afternoon. From: geoff.hutchi...@gmail.com Date: Wed, 3 Apr 2013 11:37:50 -0400 To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting We are several users of Avogadro 1.0.3 running the application on Mac OS-X 10.7. It keeps crashing every time you copy-paste the coordinates into some other editor, vi, emacs, Word.. or anything. Try Avogadro 1.1.0 or a nightly build: http://avogadro.openmolecules.net/nightly/mac/unstable/ Hope that helps,-Geoff -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting
The problem with Avogadro is a following: 1. pasting a structure into Avogadro and then doing select all and copy makes Avogadro crash. 2. loading a structure via File-Open and then select all and copy makes Avogadro crash 3. doing the above operations, but instead of select-all and copy, save to file works. This is when running Avogadro 1.1.0 on a Mac OS X running 10.6.8. Running Avogadro 1.0.3 runs fine on a machine at work. I will try to install 1.0.3 on this machine (where Avogadro 1.1.0 keeps crashing) to see if that verison is stable. From: jfhaeff...@hotmail.com To: avogadro-discuss@lists.sourceforge.net Date: Wed, 3 Apr 2013 11:49:42 -0400 Subject: Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting Thanks! We will try it out this afternoon. From: geoff.hutchi...@gmail.com Date: Wed, 3 Apr 2013 11:37:50 -0400 To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] Avogadro crashing when copying-pasting We are several users of Avogadro 1.0.3 running the application on Mac OS-X 10.7. It keeps crashing every time you copy-paste the coordinates into some other editor, vi, emacs, Word.. or anything. Try Avogadro 1.1.0 or a nightly build: http://avogadro.openmolecules.net/nightly/mac/unstable/ Hope that helps,-Geoff -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu
Hi Marcus, It's: Distributor ID:Ubuntu Description:Ubuntu 12.10 Release:12.10 Codename:quantal and Avogadro: Application 1.03 If you open Avogadro and build a molecule, you can select all (or partially) atoms, copy-n-paste it. That works fine. It is when you copy coordinates from a terminal window into Avogadro that is the problem. It works fine to paste those coordinates into Avogadro. It's now the problem comes around. Copying and pasting in Avogadro now only results in pasting the coordinates copied from the Terminal window that is stored in the buffer, clipboard.. oo whatever it's called. The list that stores the coordinates doesn't get updated. It's a problem that makes me not being able to use Avogadro under Ubuntu. On mac I have had other problems. The program crashes every time I am trying to paste coordinates into Avogadro or paste them into, say, Emacs. I have tried to remove Avogadro from the Mac and re-installed it. but the problem persists on that machine. I used Avogadro for 1 1/2 year on it until this now happens. Is it a memory allocation problem of some sort? I love Avogadro and use it every day. best program around. It's just that it bugs and crashes... regards, Fredrik Date: Sat, 19 Jan 2013 14:49:53 -0500 From: marcus.hanw...@kitware.com To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu On Sat, Jan 19, 2013 at 1:23 PM, Marcus D. Hanwell marcus.hanw...@kitware.com wrote: Hi, On Sat, Jan 19, 2013 at 10:52 AM, fredrik haeffner jfhaeff...@hotmail.com wrote: Hi! Avogadro's cut-n-paste doesn't work for me running on Ubuntu. Yes, you can copy a XYZ-file from a terminal window and paste it into Avogadro. However, say, you select 3 atoms in Avogadro and copy-n-paste it in the same Avogadro window, it keeps pasting what was orginally stored (from the Terminal window). Otherwise it seems to work great. Could you let me know what version of Avogadro and Ubuntu this is on? I don't use Ubuntu myself, but there are a few people in the office who do so I could likely take a look. It works fine here on Linux using Avogadro's master from today (Arch Linux 64 bit). That code has not changed very much, but I know Ubuntu is probably still on Avogadro 1.0.3 or so. I have been using Avogadro for years on Mac OS-X and the program is very unstable, that's why I decided to give Ubuntu a go. It would be great to hear from someone about this! We have tried to reduce crashes, and with Avogadro 2 rewrite that is something I am focusing on - a stable and well tested core. Work is progressing well there, but it is not ready to replace Avogadro 1 yet. The copy/paste code has not changed much, and I use that functionality quite regularly on Linux. Another point I just remembered about Ubuntu - they tend to break the Open Babel package up, I have looked at other people's systems where installing all of the Open Babel packages made several features work (I think missing data files is one culprit). This may have improved, if not we should try and get in touch with the Ubuntu developer to get them to adjust the dependencies of the Avogadro package. Marcus -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122912 ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnmore_123012___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
