Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu
If we don't hear about crashes or bugs, we can't fix them. I use it on my Mac (indeed, the Mac version is built on my desktop) and haven't had crashes, except of course on experimental code. :-) I just tried copy/paste from Avogadro 1.0.3 and 1.1.0 into Aquamacs, and it was fine. Does this only occur on one Mac? What version of Emacs are you using? Hope that helps, -Geoff On mac I have had other problems. The program crashes every time I am trying to paste coordinates into Avogadro or paste them into, say, Emacs. I have tried to remove Avogadro from the Mac and re-installed it. but the problem persists on that machine. I used Avogadro for 1 1/2 year on it until this now happens. Is it a memory allocation problem of some sort? .. I love Avogadro and use it every day. best program around. It's just that it bugs and crashes... -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnmore_123012 ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu
Hi, On Sat, Jan 19, 2013 at 10:52 AM, fredrik haeffner jfhaeff...@hotmail.com wrote: Hi! Avogadro's cut-n-paste doesn't work for me running on Ubuntu. Yes, you can copy a XYZ-file from a terminal window and paste it into Avogadro. However, say, you select 3 atoms in Avogadro and copy-n-paste it in the same Avogadro window, it keeps pasting what was orginally stored (from the Terminal window). Otherwise it seems to work great. Could you let me know what version of Avogadro and Ubuntu this is on? I don't use Ubuntu myself, but there are a few people in the office who do so I could likely take a look. It works fine here on Linux using Avogadro's master from today (Arch Linux 64 bit). That code has not changed very much, but I know Ubuntu is probably still on Avogadro 1.0.3 or so. I have been using Avogadro for years on Mac OS-X and the program is very unstable, that's why I decided to give Ubuntu a go. It would be great to hear from someone about this! We have tried to reduce crashes, and with Avogadro 2 rewrite that is something I am focusing on - a stable and well tested core. Work is progressing well there, but it is not ready to replace Avogadro 1 yet. The copy/paste code has not changed much, and I use that functionality quite regularly on Linux. Marcus -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122912 ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu
On Sat, Jan 19, 2013 at 1:23 PM, Marcus D. Hanwell marcus.hanw...@kitware.com wrote: Hi, On Sat, Jan 19, 2013 at 10:52 AM, fredrik haeffner jfhaeff...@hotmail.com wrote: Hi! Avogadro's cut-n-paste doesn't work for me running on Ubuntu. Yes, you can copy a XYZ-file from a terminal window and paste it into Avogadro. However, say, you select 3 atoms in Avogadro and copy-n-paste it in the same Avogadro window, it keeps pasting what was orginally stored (from the Terminal window). Otherwise it seems to work great. Could you let me know what version of Avogadro and Ubuntu this is on? I don't use Ubuntu myself, but there are a few people in the office who do so I could likely take a look. It works fine here on Linux using Avogadro's master from today (Arch Linux 64 bit). That code has not changed very much, but I know Ubuntu is probably still on Avogadro 1.0.3 or so. I have been using Avogadro for years on Mac OS-X and the program is very unstable, that's why I decided to give Ubuntu a go. It would be great to hear from someone about this! We have tried to reduce crashes, and with Avogadro 2 rewrite that is something I am focusing on - a stable and well tested core. Work is progressing well there, but it is not ready to replace Avogadro 1 yet. The copy/paste code has not changed much, and I use that functionality quite regularly on Linux. Another point I just remembered about Ubuntu - they tend to break the Open Babel package up, I have looked at other people's systems where installing all of the Open Babel packages made several features work (I think missing data files is one culprit). This may have improved, if not we should try and get in touch with the Ubuntu developer to get them to adjust the dependencies of the Avogadro package. Marcus -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122912 ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu
Hi Marcus, It's: Distributor ID:Ubuntu Description:Ubuntu 12.10 Release:12.10 Codename:quantal and Avogadro: Application 1.03 If you open Avogadro and build a molecule, you can select all (or partially) atoms, copy-n-paste it. That works fine. It is when you copy coordinates from a terminal window into Avogadro that is the problem. It works fine to paste those coordinates into Avogadro. It's now the problem comes around. Copying and pasting in Avogadro now only results in pasting the coordinates copied from the Terminal window that is stored in the buffer, clipboard.. oo whatever it's called. The list that stores the coordinates doesn't get updated. It's a problem that makes me not being able to use Avogadro under Ubuntu. On mac I have had other problems. The program crashes every time I am trying to paste coordinates into Avogadro or paste them into, say, Emacs. I have tried to remove Avogadro from the Mac and re-installed it. but the problem persists on that machine. I used Avogadro for 1 1/2 year on it until this now happens. Is it a memory allocation problem of some sort? I love Avogadro and use it every day. best program around. It's just that it bugs and crashes... regards, Fredrik Date: Sat, 19 Jan 2013 14:49:53 -0500 From: marcus.hanw...@kitware.com To: avogadro-discuss@lists.sourceforge.net Subject: Re: [Avogadro-Discuss] cut-n-paste in Avogadro running on Ubuntu On Sat, Jan 19, 2013 at 1:23 PM, Marcus D. Hanwell marcus.hanw...@kitware.com wrote: Hi, On Sat, Jan 19, 2013 at 10:52 AM, fredrik haeffner jfhaeff...@hotmail.com wrote: Hi! Avogadro's cut-n-paste doesn't work for me running on Ubuntu. Yes, you can copy a XYZ-file from a terminal window and paste it into Avogadro. However, say, you select 3 atoms in Avogadro and copy-n-paste it in the same Avogadro window, it keeps pasting what was orginally stored (from the Terminal window). Otherwise it seems to work great. Could you let me know what version of Avogadro and Ubuntu this is on? I don't use Ubuntu myself, but there are a few people in the office who do so I could likely take a look. It works fine here on Linux using Avogadro's master from today (Arch Linux 64 bit). That code has not changed very much, but I know Ubuntu is probably still on Avogadro 1.0.3 or so. I have been using Avogadro for years on Mac OS-X and the program is very unstable, that's why I decided to give Ubuntu a go. It would be great to hear from someone about this! We have tried to reduce crashes, and with Avogadro 2 rewrite that is something I am focusing on - a stable and well tested core. Work is progressing well there, but it is not ready to replace Avogadro 1 yet. The copy/paste code has not changed much, and I use that functionality quite regularly on Linux. Another point I just remembered about Ubuntu - they tend to break the Open Babel package up, I have looked at other people's systems where installing all of the Open Babel packages made several features work (I think missing data files is one culprit). This may have improved, if not we should try and get in touch with the Ubuntu developer to get them to adjust the dependencies of the Avogadro package. Marcus -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. SALE $99.99 this month only -- learn more at: http://p.sf.net/sfu/learnmore_122912 ___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss -- Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnmore_123012___ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
