Re: [base] MAGE-ML for ArrayExpress update, plug-ins

2006-01-16 Thread Jari Häkkinen
Yes ... but probably after release. We have already assigned enough for 
us all to do, but this wil be added asap after Feb 23. There are more R 
related stuff to be implemented during the spring.



Jari

charles girardot wrote:

Hi Jari,

Could you make sure that the R dispatcher (AROMA BASE, by Henrik 
Bengtsson from Lund) continues to work in BASE 2.0


Thanks

Charles

On 16 janv. 06, at 13:40, Jari Häkkinen wrote:


Hi Angela,


BASE plug-ins ... we are slowly working on getting the web page up 
again. Meanwhile we urge those of you who have plug-ins to send them 
to us through http://lev.thep.lu.se/trac/baseplugins



Jari

Angela Burr wrote:


Hi,
Our group has been using BASE for over a year and we have been 
eagerly awaiting
the completion of MAGE-ML creation corrections (so that MAGE-ML files 
created by
BASE are acceptable for ArrayExpress submission).  We have data in 
BASE that we
need to submit to ArrayExpress.  Would you please give an update on 
the progress
and possibly a timeline for when these changes will be incorporated 
into BASE
1.2.x?  We really appreciate all the work on this project, adding 
this function
in BASE will be very helpful.  Also, when will more plug-ins be added 
to the new BASE plug-in development site?

Our group is interested in adding more analysis plug-ins to our BASE
installation and I'm sure that many BASE plugins have already been 
written.  We
would prefer not replicate the work if others have already written 
similar

plug-ins.  Thank you for the updates in advance.  Angela Burr
Center for Genomics and Bioinformatics
Indiana University, Bloomington
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--
Jari Häkkinen, PhD
Complex Systems Divisionmailto:[EMAIL PROTECTED]
Department of Theoretical Physics   phone: +46 (0)46 2229347
Lund University fax:   +46 (0)46 2229686
Sölvegatan 14a, SE-223 62 Lund, Sweden  http://www.thep.lu.se



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--
Jari Häkkinen, PhD
Complex Systems Divisionmailto:[EMAIL PROTECTED]
Department of Theoretical Physics   phone: +46 (0)46 2229347
Lund University fax:   +46 (0)46 2229686
Sölvegatan 14a, SE-223 62 Lund, Sweden  http://www.thep.lu.se



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Re: [base] remote servers

2006-01-16 Thread Johan Enell

Hi Charles,

On the plug-ins page in the Analyzq data menu you should find  
what you are looking for. Just below the table and above the line  
where you adjust the permission levels you should find a line where  
you can activate or deactivate the plug-ins you have selected in the  
table on your avalible servers.


/Johan



16 jan 2006 kl. 17.06 skrev charles girardot:


Hi all,

We just added remote computers to our BASE installation to run  
plugins. It works fine given that we had to set the proper server  
id to be used by the plugin *manually* in the base db (I mean by  
issuing : update ProgramServer set computationServer  = 3 where  
program = 10 )


We never managed to find how to set up this using the web  
interface. Did we miss something ?


Thanks


Cheers

Charles



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