Hi James,

Option 2 on that ticket (http://base.thep.lu.se/ticket/682) works quite 
well for me. Especially if your application/installation is not 
particularly gaining any substantial features of mysql 5.0.27. So 
migrating to a lower Mysql version should be ok. Do remember to backup 
your data though.


However, if your machine has a massive memory capability then go for 
option 3.

¬Dominic

Collett, James R wrote:
> Hello All,
> 
> I've attempted an upgrade of my base-2.2.2 installation with base-2.3.2
> multiple times, but each time I am unable to view items listed in the
> BioMaterials table using the Samples, Extracts, or Label Extracts web
> pages.  Almost all the icons for managing items on these pages are
> missing as well, such the ones that say New, Delete, Restore, Share,
> etc., as well as the preset filter, number of records to see, etc. The
> Samples page has one little stub of an icon for "New".  If I click this
> I can bring up the New Sample dialog box and create a sample that is
> written to the MySQL BioMaterials table, but the new item fails to show
> up on the Samples page.
> 
> My installation is pretty standard (Red Hat 3.4.6-8,
> apache-tomcat-5.5.20,  MySQL-server-standard-5.0.27-0, jdk 1.6.0). I
> have been following the documentation instructions to the letter, using
> updatedb.sh and updateindexes.sh, and I edited base.config to match my
> system. Prior to the upgrade, I had modified the extended-properties.xml
> and raw-data-types.xml files, but they worked fine with 2.2.2.
> 
> Any ideas on what could be going wrong?
> 
> Thanks,
> 
> Jim Collett
> 
> James R. Collett, Ph.D.
> Systems Biology Fellow
> Battelle Memorial Institute
> Pacific Northwest National Laboratory
> 
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