vegard nygaard wrote: > Hi. > This is for Dominic I guess. > > The last error I reported yesterday was from my own shortcutting and is > fixed. (I had not yet made a design). > > Today I got an error when the plug-in tried to use the > AnnotationTypeCvImporter. > > BASE error message: > IMPORT FAILS: The tab2mage file supplied is not compliant with the tab2mage > specification > > This was the error message from tomcat: > . > . > auto-detecting PluginConfiguration > net.sf.basedb.core.InvalidDataException: Plugin does not implement > uk.ac.ebi.nugo.plugins.AnnotationTypeCvImporter: Plugin definition[id=28; > name=Annotation Type and CV Loader] > at
Quick question, are using the AnnotationTypeCvImporter plugin contained in the Tab2MageImporter.jar file? > > I had installed the AnnotationTypeCvImporter with the > annotationtypecvimporter.xml config. I found the annotation file made by the > importer (anntype.txt) on BASE2's file system and successfully imported it > using only AnnotationTypeCvImporter. I did all this as the same user with > admin role. Somehow the importer plug-in was not able to find the > AnnotationTypeCvImporter I could manually find and use. When I tried to > debug in eclipse I found that the top java ref was not in my source code; > uk.ac.ebi.nugo.plugins.util.PluginConfigDetector.getConfigs. It was at > uk\ac\ebi\nugo\plugins\util\tab2mage\PluginConfigDetector.java in the source > code I downloaded from http://lev.thep.lu.se/trac/baseplugins/browser/trunk. > So I think the jar file is out of sync with the source code. This problem > might have been fixed but not included in the jar file. I hope this is the > case. > > Sorry, I have made some improvement to the code to fix bugs, enhancements e.g. pooling support and also working on an enhanced validation routine. A sub branch to hold previous version would suffice but Jari is the expert on this. May I also refer you to Jari's email on links. Please use this link for the source. http://baseplugins.thep.lu.se/browser/trunk/uk/ ¬Dominic ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
