On 8/20/2015 4:01 AM, beginners-digest-h...@perl.org wrote:
Subject:
Re: converting Genbank format in gff format
From:
John SJ Anderson <j...@genehack.org>
Date:
8/17/2015 10:03 PM
To:
Perl Beginners <beginners@perl.org>
On Mon, Aug 17, 2015 at 3:58 PM, Uri Guttman <u...@stemsystems.com
<mailto:u...@stemsystems.com>> wrote:
On 08/17/2015 03:57 AM, atteyet-alla.yas...@ukb.uni-bonn.de
<mailto:atteyet-alla.yas...@ukb.uni-bonn.de> wrote:
hi all,
is there a possibilty to convert Genbank format in gff format
using perl? I installed perl5 in my linux.
Atteyet-Alla -- there's a 'genbank2gff' script in the Bioperl dist,
perhaps that at least gives you some hints on where to start? Code is
here:
https://metacpan.org/source/CJFIELDS/BioPerl-1.6.924/scripts/Bio-DB-GFF/bp_genbank2gff.pl
You'll need to install the Bioperl module.
the answer is yes, perl can convert anything into anything. that
is true for most if not all languages. do you have more questions?
Wow, Uri, do you suppose Perl could convert your smug condescending
answer into something useful? Geez.
Maybe a bit snotty, but I don't fault somebody for answering
a question accurately. Maybe the OP is not aware of CPAN.
I suggest he do a DDG search for CPAN.
Good think he is on Linux, because Activestate does not have
anything on "Genbank" or "gff".
Mike