Re: converting Genbank format in gff format

[Mike Flannigan]

On 8/20/2015 4:01 AM, beginners-digest-h...@perl.org wrote:

Subject:
Re: converting Genbank format in gff format
From:
John SJ Anderson 
Date:
8/17/2015 10:03 PM

To:
Perl Beginners 


On Mon, Aug 17, 2015 at 3:58 PM, Uri Guttman <mailto:u...@stemsystems.com>> wrote:


On 08/17/2015 03:57 AM, atteyet-alla.yas...@ukb.uni-bonn.de
<mailto:atteyet-alla.yas...@ukb.uni-bonn.de> wrote:


hi all,

is there a possibilty to convert Genbank format in gff format
using perl? I installed perl5 in my linux.



Atteyet-Alla -- there's a 'genbank2gff' script in the Bioperl dist, 
perhaps that at least gives you some hints on where to start? Code is 
here:


https://metacpan.org/source/CJFIELDS/BioPerl-1.6.924/scripts/Bio-DB-GFF/bp_genbank2gff.pl 



You'll need to install the Bioperl module.


the answer is yes, perl can convert anything into anything. that
is true for most if not all languages. do you have more questions?



Wow, Uri, do you suppose Perl could convert your smug condescending 
answer into something useful? Geez.





Maybe a bit snotty, but I don't fault somebody for answering
a question accurately.  Maybe the OP is not aware of CPAN.
I suggest he do a DDG search for CPAN.

Good think he is on Linux, because Activestate does not have
anything on "Genbank" or "gff".


Mike

Re: converting Genbank format in gff format

[Uri Guttman]

On 08/17/2015 11:03 PM, John SJ Anderson wrote:
On Mon, Aug 17, 2015 at 3:58 PM, Uri Guttman > wrote:


On 08/17/2015 03:57 AM, atteyet-alla.yas...@ukb.uni-bonn.de
 wrote:


hi all,

is there a possibilty to convert Genbank format in gff format
using perl? I installed perl5 in my linux.



Atteyet-Alla -- there's a 'genbank2gff' script in the Bioperl dist, 
perhaps that at least gives you some hints on where to start? Code is 
here:


https://metacpan.org/source/CJFIELDS/BioPerl-1.6.924/scripts/Bio-DB-GFF/bp_genbank2gff.pl 



You'll need to install the Bioperl module.


the answer is yes, perl can convert anything into anything. that
is true for most if not all languages. do you have more questions?



Wow, Uri, do you suppose Perl could convert your smug condescending 
answer into something useful? Geez.



nobody replied for a good while. there wasn't a useful question there. i 
solicited more questions.


uri

Re: converting Genbank format in gff format

[John SJ Anderson]

On Mon, Aug 17, 2015 at 3:58 PM, Uri Guttman  wrote:

> On 08/17/2015 03:57 AM, atteyet-alla.yas...@ukb.uni-bonn.de wrote:
>
> hi all,
>
> is there a possibilty to convert Genbank format in gff format using perl?
> I installed perl5 in my linux.
>
>
Atteyet-Alla -- there's a 'genbank2gff' script in the Bioperl dist, perhaps
that at least gives you some hints on where to start? Code is here:

https://metacpan.org/source/CJFIELDS/BioPerl-1.6.924/scripts/Bio-DB-GFF/bp_genbank2gff.pl


You'll need to install the Bioperl module.

> the answer is yes, perl can convert anything into anything. that is true
> for most if not all languages. do you have more questions?
>
>
Wow, Uri, do you suppose Perl could convert your smug condescending answer
into something useful? Geez.


john.

-- 
*John Anderson* • j...@genehack.org • *@genehack* • www.genehack.org
Suck it up, buttercup.

Re: converting Genbank format in gff format

[Uri Guttman]

On 08/17/2015 03:57 AM, atteyet-alla.yas...@ukb.uni-bonn.de wrote:


hi all,

is there a possibilty to convert Genbank format in gff format using 
perl? I installed perl5 in my linux.



the answer is yes, perl can convert anything into anything. that is true 
for most if not all languages. do you have more questions?


uri