[Bioc-devel] Submission of a revision of a package
Dear all, I first submitted my package GeneGeneInteR with the old version of the issue tracker the 25th of May. I sent a revision of my package the 17th of june, but in the meanwhile the Github submission has opened. Should I use the Github-based tracker to submit the revision of my package or should I wait for the end of the revision process? Thank you in advance for your response, Mathieu ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] package devel page not available
On 07/18/2016 10:10 AM, Ludwig Geistlinger wrote:
Thx Martin, I've missed that.
BTW: Is there a best practice for incorporating packages that are not
maintained anymore?
Am I supposed to copy the part of the discontinued package I am building
on and include that in my package? Or am I able to somehow import from an
archived version of the package?
the package will not be available to your users so you must act as
though it does not exist.
One option would be to adopt the package yourself (ideally after seeking
consent of the original authors, but I believe they did not respond to
earlier email).
Another option would be to break out the generally useful functionality
of the package into a new package, and make it available through
Bioconductor.
The least favorable but perhaps easiest is to copy the desired code.
All of these options need to be pursued within the context of the
original license, in this case GPL-2. For copied code this includes
clearly marking the changes and distributing your package under GPL-2.
Martin
Thx,
Ludwig
On 07/18/2016 04:27 AM, Ludwig Geistlinger wrote:
Hi,
I am trying to access the devel page of my package
https://www.bioconductor.org/packages/devel/bioc/html/EnrichmentBrowser.html
but I am obtaining
Page Not Found
The page you were looking for was not found.
What is the reason for that?
it (has always?) failed to build in devel
http://bioconductor.org/checkResults/3.4/bioc-LATEST/EnrichmentBrowser/
because neaGUI is one of the 17 packages marked as deprecated (the
package was not building and the author did not respond to email) in
release 3.3 for removal in 3.4.
Martin
Thx,
Ludwig
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Re: [Bioc-devel] package devel page not available
Thx Martin, I've missed that. BTW: Is there a best practice for incorporating packages that are not maintained anymore? Am I supposed to copy the part of the discontinued package I am building on and include that in my package? Or am I able to somehow import from an archived version of the package? Thx, Ludwig > On 07/18/2016 04:27 AM, Ludwig Geistlinger wrote: >> Hi, >> >> I am trying to access the devel page of my package >> >> https://www.bioconductor.org/packages/devel/bioc/html/EnrichmentBrowser.html >> >> but I am obtaining >> >> Page Not Found >> The page you were looking for was not found. >> >> What is the reason for that? > > it (has always?) failed to build in devel > > http://bioconductor.org/checkResults/3.4/bioc-LATEST/EnrichmentBrowser/ > > because neaGUI is one of the 17 packages marked as deprecated (the > package was not building and the author did not respond to email) in > release 3.3 for removal in 3.4. > > Martin > >> >> Thx, >> Ludwig >> >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Dr. Ludwig Geistlinger Lehr- und Forschungseinheit für Bioinformatik Institut für Informatik Ludwig-Maximilians-Universität München Amalienstrasse 17, 2. Stock, Büro A201 80333 München Tel.: 089-2180-4067 eMail: ludwig.geistlin...@bio.ifi.lmu.de ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] package devel page not available
Hi, I am trying to access the devel page of my package https://www.bioconductor.org/packages/devel/bioc/html/EnrichmentBrowser.html but I am obtaining Page Not Found The page you were looking for was not found. What is the reason for that? Thx, Ludwig -- Dr. Ludwig Geistlinger Lehr- und Forschungseinheit für Bioinformatik Institut für Informatik Ludwig-Maximilians-Universität München Amalienstrasse 17, 2. Stock, Büro A201 80333 München Tel.: 089-2180-4067 eMail: ludwig.geistlin...@bio.ifi.lmu.de ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
