Re: [Bioc-devel] Github repo with multiple BioC packages
Hi Nitesh, Thank you - the second link describes our setup accurately. I'll follow those instructions. Best,Shraddha On Thu, Jun 13, 2019 at 3:12 PM Turaga, Nitesh < nitesh.tur...@roswellpark.org> wrote: > Hi Shraddha, > > The packages need to be in two separate GitHub repos. > > There is a way to submit the data package and the software package > together. The data package can become an experiment hub package if you > wish. > > > https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html > > > https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#submitting-related-packages > > Best, > > Nitesh > > > On Jun 13, 2019, at 2:45 PM, Shraddha Pai > wrote: > > > > Hello BioC devel community, > > > > I am preparing two packages I would like to submit to BioC: one is a > > software package (34Mb), and the other is a companion package with data > > required to run vignettes in the former (106Mb). > > Both are currently in a single github repo, with the following directory > > structure: > > > > - / > > - R/ man/ DESCRIPTION NAMESPACE, etc > > - / > > - data/ inst/ NAMESPACE DESCRIPTION > > > > Is there a way to link the same github repo (here, "MasterRepo") to two > > different BioC packages? Or do we need to move each package into its own > > repo? > > > > Thanks in advance, > > Shraddha > > > > Shraddha Pai > > Post-doctoral Fellow, http://baderlab.org > > The Donnelly Center, University of Toronto > > @spaiglass on Twitter > > > > [[alternative HTML version deleted]] > > > > ___ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > -- Shraddha Pai Post-doctoral Fellow, http://baderlab.org The Donnelly Center, University of Toronto @spaiglass on Twitter [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Github repo with multiple BioC packages
Hi Shraddha, The packages need to be in two separate GitHub repos. There is a way to submit the data package and the software package together. The data package can become an experiment hub package if you wish. https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#submitting-related-packages Best, Nitesh > On Jun 13, 2019, at 2:45 PM, Shraddha Pai wrote: > > Hello BioC devel community, > > I am preparing two packages I would like to submit to BioC: one is a > software package (34Mb), and the other is a companion package with data > required to run vignettes in the former (106Mb). > Both are currently in a single github repo, with the following directory > structure: > > - / > - R/ man/ DESCRIPTION NAMESPACE, etc > - / > - data/ inst/ NAMESPACE DESCRIPTION > > Is there a way to link the same github repo (here, "MasterRepo") to two > different BioC packages? Or do we need to move each package into its own > repo? > > Thanks in advance, > Shraddha > > Shraddha Pai > Post-doctoral Fellow, http://baderlab.org > The Donnelly Center, University of Toronto > @spaiglass on Twitter > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] CHECK ERROR in tokay1 for BioC 3.10
Hi, The package trackViewer get check error in tokay1 (windows) say: Error in library(org.Hs.eg.db) : there is no package called 'org.Hs.eg.db' How could I debug this error? Thank you for your help. Yours Sincerely, Jianhong Ou [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Github repo with multiple BioC packages
Hello BioC devel community, I am preparing two packages I would like to submit to BioC: one is a software package (34Mb), and the other is a companion package with data required to run vignettes in the former (106Mb). Both are currently in a single github repo, with the following directory structure: - / - R/ man/ DESCRIPTION NAMESPACE, etc - / - data/ inst/ NAMESPACE DESCRIPTION Is there a way to link the same github repo (here, "MasterRepo") to two different BioC packages? Or do we need to move each package into its own repo? Thanks in advance, Shraddha Shraddha Pai Post-doctoral Fellow, http://baderlab.org The Donnelly Center, University of Toronto @spaiglass on Twitter [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
