[Bioc-devel] merge github + bioc versions

2019-11-01 Thread Venu Thatikonda
Hello all,

I am a bit confused by how git works with bioc ecosystem. I am following
this guide to sync my github + bioc repos (for the first time).

https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

After step-6, I see following branches

* master
  remotes/origin/HEAD -> origin/master
  remotes/origin/master
  remotes/upstream/RELEASE_3_10
  remotes/upstream/master

So, if I add new features to the package and commit & push to master
branch, does it affect current version that is released in bioc10? Or do
they go to bioc11 devel branch and generate build reports, without
affecting the package in bioc10?

Should I create a branch RELEASE_3_11 and commit all changes to this
branch? I want the changes to be released in bioc11 and do not want to
affect bioc10 version.

Thank you & have a nice day!

-- 
Best regards
Venu Thatikonda
https://itsvenu.github.io/

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Re: [Bioc-devel] merge github + bioc versions

2019-11-01 Thread Shepherd, Lori
To push to your github branch
git push origin master

To push to the Bioconductor git server and have changes active in Bioconductor 
devel
git push upstream master


The upstream master branch is equivalent to whatever the current devel branch 
is on Bioconductor (in this case Bioc 3.11).  Pushing to the master branch will 
have no effect on the Bioc 3.10 (you would need to push to upstream 
RELEASE_3_10   in order to make changes to the Bioconductor Release 3.10 branch)


Hope this helps.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Venu 
Thatikonda 
Sent: Friday, November 1, 2019 9:49 AM
To: bioc-devel 
Subject: [Bioc-devel] merge github + bioc versions

Hello all,

I am a bit confused by how git works with bioc ecosystem. I am following
this guide to sync my github + bioc repos (for the first time).

https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

After step-6, I see following branches

* master
  remotes/origin/HEAD -> origin/master
  remotes/origin/master
  remotes/upstream/RELEASE_3_10
  remotes/upstream/master

So, if I add new features to the package and commit & push to master
branch, does it affect current version that is released in bioc10? Or do
they go to bioc11 devel branch and generate build reports, without
affecting the package in bioc10?

Should I create a branch RELEASE_3_11 and commit all changes to this
branch? I want the changes to be released in bioc11 and do not want to
affect bioc10 version.

Thank you & have a nice day!

--
Best regards
Venu Thatikonda
https://itsvenu.github.io/

[[alternative HTML version deleted]]

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[Bioc-devel] sorry, no build report for BioC 3.10 today

2019-11-01 Thread Pages, Herve
Dear Bioconductor developers,

Some issue with the software builds prevents us from having a build 
report today for BioC 3.10. Things should get back to normal tomorrow.

Sorry for the inconvenience.

Cheers,
H.

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fredhutch.org
Phone:  (206) 667-5791
Fax:(206) 667-1319
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