Re: [Bioc-devel] Error in Nebbiolo1
nebbiolo1 uses a special setup to detect undeclared deps i.e. it will fail to find a package if you didn't list it in the Suggests field of your package. In this case you seem to be using BiocStyle for your vignette so you need to add it to your Suggests field. Best, H. On 1/5/24 11:49, erhanozer19 via Bioc-devel wrote: > I apologize for the typo in the mail > > 2024-01-05 22:43, erhanozer19 via Bioc-devel yazmış: >> Dead Biconductor Community, >> >> According to the new build report, check process in Nebbiolo1 of my >> package SVMDO resulted in error: there is no package called BiocStyle. >> Yet, in other systems the check process was successful. >> >> Is this related with Nebbiolo1? >> >> ___ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > -- > Bu e-posta mesajı ve içeriği gizli veya özel bilgiler içerebilir. > Mesajın içeriğinde bulunan tüm fikir ve görüşler sadece göndericiye > ait olup, Marmara Üniversitesi’nin resmi görüşünü yansıtmaz. Kurumumuz > bu e-posta içeriğindeki bilgilerin kullanılması nedeniyle hiç kimseye > karşı sorumlu tutulamaz. Mesajın belirlenen alıcılardan biri > değilseniz, mesaj içeriğini ya da eklerini kullanmayınız, > kopyalamayınız, yaymayınız, başka kişilere yönlendirmeyiniz ve mesajı > gönderen kişiyi derhal e-posta yoluyla haberdar ederek bu mesajı ve > eklerini herhangi bir kopyasını muhafaza etmeksizin siliniz. Kurumumuz > size, mesajın ve bilgilerinin değişikliğe uğramaması, bütünlüğünün ve > gizliliğin korunması konusunda garanti vermemekte olup, e-posta > içeriğine yetkisiz olarak yapılan müdahale, virüs içermesi ve/veya > bilgisayar sisteminize verebileceği herhangi bir zarardan da sorumlu > değildir.This e-mail message and its content may cont > ain confidential or proprietary information. All ideas and opinions > contained in the message are solely those of the sender and do not > reflect the official opinion of Marmara University. Our institution > cannot be held responsible to anyone for the use of the information > contained in this e-mail. If you are not one of the designated > recipients of the message, do not use, copy, disseminate, forward the > message content or attachments, and immediately notify the sender of > the message via e-mail and delete this message and its attachments > without retaining any copies. Our institution does not guarantee you > that the message and its information will not be changed, its > integrity and confidentiality will be protected, and is not > responsible for any unauthorized intervention to the e-mail content, > viruses and/or any damage it may cause to your computer system. > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Bioconductor Core Team hpages.on.git...@gmail.com [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Error in Nebbiolo1
I apologize for the typo in the mail 2024-01-05 22:43, erhanozer19 via Bioc-devel yazmış: Dead Biconductor Community, According to the new build report, check process in Nebbiolo1 of my package SVMDO resulted in error: there is no package called BiocStyle. Yet, in other systems the check process was successful. Is this related with Nebbiolo1? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Bu e-posta mesajı ve içeriği gizli veya özel bilgiler içerebilir. Mesajın içeriğinde bulunan tüm fikir ve görüşler sadece göndericiye ait olup, Marmara Üniversitesi’nin resmi görüşünü yansıtmaz. Kurumumuz bu e-posta içeriğindeki bilgilerin kullanılması nedeniyle hiç kimseye karşı sorumlu tutulamaz. Mesajın belirlenen alıcılardan biri değilseniz, mesaj içeriğini ya da eklerini kullanmayınız, kopyalamayınız, yaymayınız, başka kişilere yönlendirmeyiniz ve mesajı gönderen kişiyi derhal e-posta yoluyla haberdar ederek bu mesajı ve eklerini herhangi bir kopyasını muhafaza etmeksizin siliniz. Kurumumuz size, mesajın ve bilgilerinin değişikliğe uğramaması, bütünlüğünün ve gizliliğin korunması konusunda garanti vermemekte olup, e-posta içeriğine yetkisiz olarak yapılan müdahale, virüs içermesi ve/veya bilgisayar sisteminize verebileceği herhangi bir zarardan da sorumlu değildir.This e-mail message and its content may cont ain confidential or proprietary information. All ideas and opinions contained in the message are solely those of the sender and do not reflect the official opinion of Marmara University. Our institution cannot be held responsible to anyone for the use of the information contained in this e-mail. If you are not one of the designated recipients of the message, do not use, copy, disseminate, forward the message content or attachments, and immediately notify the sender of the message via e-mail and delete this message and its attachments without retaining any copies. Our institution does not guarantee you that the message and its information will not be changed, its integrity and confidentiality will be protected, and is not responsible for any unauthorized intervention to the e-mail content, viruses and/or any damage it may cause to your computer system. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Error in Nebbiolo1
Dead Biconductor Community, According to the new build report, check process in Nebbiolo1 of my package SVMDO resulted in error: there is no package called BiocStyle. Yet, in other systems the check process was successful. Is this related with Nebbiolo1? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Build Report Response
Depending on when you pushed Wednesday night you might have missed the cutoff for the pull for the builders for Thursday report. We only pull, build, and check once a day. Since the Thursday report shows version 1.2.3 as shown on the report https://bioconductor.org/checkResults/3.18/bioc-LATEST/SVMDO/ the 1.2.4 version will likely appear on today's report. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of erhanozer19 via Bioc-devel Sent: Friday, January 5, 2024 8:13 AM To: Bioconductor Devel Mailing list Subject: [Bioc-devel] Build Report Response Dear Bioconductor Community, I had error in my package SVMDO due to missing LICENSE section in DESCRIPTION. I received the error message on this Wednesday night. Same night I fixed the section problem, updated the package version(in the release version) and pushed the package. Yet, I have not received an update in build report website. I can see the updated version in Bioc::CodeBrowse. Is it still being prepared ? ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1iFsVHmMFPYRw3bk5nZBIbejE-E337FHSz7z6NndgM2_y_yA52e2r5g4KJatbd5Rsq4czT6N3pZijVC2mG91pgCRTpd9Jw1KYNjv9f8mKwY7gm33p_GvqZsaSNKz3sZz_2Sfcu-jRqqtTPfBUcqV5FGhc_QwAgODFsj7vjd8J1lOcW7dCivjHw5Cgk5mnO-a90PvwPll5_gq4_2qLX9zOWPS1FoIAd42c1IWnx_n-IBNmNFSISR0I8fgrnyxQGwuox6NR7KgMY8VUB3GYq1uLxHjQl9EvSvyPS21oZH0hWls67rKYdzvp-gPjscu8adnE/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Build Report Response
Dear Bioconductor Community, I had error in my package SVMDO due to missing LICENSE section in DESCRIPTION. I received the error message on this Wednesday night. Same night I fixed the section problem, updated the package version(in the release version) and pushed the package. Yet, I have not received an update in build report website. I can see the updated version in Bioc::CodeBrowse. Is it still being prepared ? ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
