Re: [Bioc-devel] How to push to release branch

2024-01-10 Thread Yue Cao via Bioc-devel 
Dear Bioconductor team,

No worries, problem solved.

Best regards,
Yue

From: Bioc-devel  on behalf of Yue Cao via 
Bioc-devel 
Date: Thursday, 11 January 2024 at 1:36 pm
To: bioc-devel@r-project.org 
Subject: [Bioc-devel] How to push to release branch
Dear Bioconductor team,

I have received package building error for scFeatures 
https://protect-au.mimecast.com/s/_meACE8wmrtl7z166tNubi8?domain=master.bioconductor.org

It seems it is building on the RELEASE_3_18 branch. I have pushed everything to 
the devel branch, but I believe I would need to push on the release branch to 
fix this building error.

However, while I can push to the devel branch, I got errors when pushing to the 
release branch (as shown in the screenshot attachment).

Wondering if you have any clue on this. Thank you for your help.

Best regards,
Yue


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[Bioc-devel] How to push to release branch

2024-01-10 Thread Yue Cao via Bioc-devel 
Dear Bioconductor team,

I have received package building error for scFeatures 
https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/scFeatures/nebbiolo2-checksrc.html

It seems it is building on the RELEASE_3_18 branch. I have pushed everything to 
the devel branch, but I believe I would need to push on the release branch to 
fix this building error.

However, while I can push to the devel branch, I got errors when pushing to the 
release branch (as shown in the screenshot attachment).

Wondering if you have any clue on this. Thank you for your help.

Best regards,
Yue


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Re: [Bioc-devel] Single Package Builder failing to detect subscription to the Bioc-devel mailing list

2024-01-10 Thread Ramos Perez, Marcel via Bioc-devel 
Hi Boyi,

This has been resolved in BiocCheck version 1.39.12.

https://github.com/Bioconductor/BiocCheck/issues/205

Best regards,

Marcel

On 1/10/24 2:53 PM, Boyi Guo wrote:

Hi,

I had the same problem (
https://bioconductor.org/spb_reports/tpSVG_buildreport_20240109095309.html).

* Checking for bioc-devel mailing list subscription...


  * ERROR: Subscribe to the Bioc-devel mailing list by going to
https://stat.ethz.ch/mailman/listinfo/bioc-devel



In my experience, signing up the mailing list again, even though I
already signed up previously, resolved that error.
I am not sure if this practice should be advised, and I did receive an
auto email with subject line "Mailman privacy alert", telling me that
I've already signed up.

Thanks.

Best,

Boyi


On Mon, Jan 8, 2024 at 7:49 AM Kern, Lori via Bioc-devel <
bioc-devel@r-project.org> wrote:



I can confirm that this email is subscribed.  We can open an issue on
BiocCheck to investigate this more.  In the meantime I will comment on your
submission issue to ignore the error for now.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel 
 on 
behalf of Richard
Heery 
Sent: Sunday, January 7, 2024 7:17 AM
To: bioc-devel@r-project.org 

Subject: [Bioc-devel] Single Package Builder failing to detect
subscription to the Bioc-devel mailing list

Hi all,

My package submission is repeatedly failing due to an error saying I am not
subscribed to the Bioc-devel mailing list, even though I am subscribed
using this email. This is the same email I have in the DESCRIPTION file and
also as my git user.email both globally and locally in the repository. Any
ideas what could be causing this?

Cheers,

Richard

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---
Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263


This email message may contain legally privileged and/or confidential 
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recipient(s), you are hereby notified that any disclosure, copying, 
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Re: [Bioc-devel] Single Package Builder failing to detect subscription to the Bioc-devel mailing list

2024-01-10 Thread Kern, Lori via Bioc-devel 
You shouldn't have to sign up again. There was a bug in the code that should be 
fixed in the latest push to BiocCheck version 1.39.12

https://github.com/Bioconductor/BiocCheck/issues/205
[https://opengraph.githubassets.com/ab6db7795256e2a9e1760a2a42b407dd2af58f3ce9960f3072377117a3801dae/Bioconductor/BiocCheck/issues/205]
bioc-devel mailing list check still not always accurate · Issue #205 · 
Bioconductor/BiocCheck
I can confirm the single package builder is using version 1.39.10 See mailing 
list https://stat.ethz.ch/pipermail/bioc-devel/2024-January/020119.html for 
email = "richardhe...@gmail.com". I can con...
github.com




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Boyi Guo 
Sent: Wednesday, January 10, 2024 2:53 PM
To: Kern, Lori 
Cc: Richard Heery ; bioc-devel@r-project.org 

Subject: Re: [Bioc-devel] Single Package Builder failing to detect subscription 
to the Bioc-devel mailing list

Hi,

I had the same problem 
(https://bioconductor.org/spb_reports/tpSVG_buildreport_20240109095309.html).

* Checking for bioc-devel mailing list subscription...
  * ERROR: Subscribe to the Bioc-devel mailing list by going to 
https://stat.ethz.ch/mailman/listinfo/bioc-devel

In my experience, signing up the mailing list again, even though I already 
signed up previously, resolved that error.
I am not sure if this practice should be advised, and I did receive an auto 
email with subject line "Mailman privacy alert", telling me that I've already 
signed up.


Thanks.


Best,

Boyi

On Mon, Jan 8, 2024 at 7:49 AM Kern, Lori via Bioc-devel 
mailto:bioc-devel@r-project.org>> wrote:
I can confirm that this email is subscribed.  We can open an issue on BiocCheck 
to investigate this more.  In the meantime I will comment on your submission 
issue to ignore the error for now.



Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel 
mailto:bioc-devel-boun...@r-project.org>> on 
behalf of Richard Heery mailto:richardhe...@gmail.com>>
Sent: Sunday, January 7, 2024 7:17 AM
To: bioc-devel@r-project.org 
mailto:bioc-devel@r-project.org>>
Subject: [Bioc-devel] Single Package Builder failing to detect subscription to 
the Bioc-devel mailing list

Hi all,

My package submission is repeatedly failing due to an error saying I am not
subscribed to the Bioc-devel mailing list, even though I am subscribed
using this email. This is the same email I have in the DESCRIPTION file and
also as my git user.email both globally and locally in the repository. Any
ideas what could be causing this?

Cheers,

Richard

[[alternative HTML version deleted]]

___
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This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]

Re: [Bioc-devel] Single Package Builder failing to detect subscription to the Bioc-devel mailing list

2024-01-10 Thread Boyi Guo 
Hi,

I had the same problem (
https://bioconductor.org/spb_reports/tpSVG_buildreport_20240109095309.html).

* Checking for bioc-devel mailing list subscription...
>   * ERROR: Subscribe to the Bioc-devel mailing list by going to
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

In my experience, signing up the mailing list again, even though I
already signed up previously, resolved that error.
I am not sure if this practice should be advised, and I did receive an
auto email with subject line "Mailman privacy alert", telling me that
I've already signed up.

Thanks.

Best,

Boyi


On Mon, Jan 8, 2024 at 7:49 AM Kern, Lori via Bioc-devel <
bioc-devel@r-project.org> wrote:

> I can confirm that this email is subscribed.  We can open an issue on
> BiocCheck to investigate this more.  In the meantime I will comment on your
> submission issue to ignore the error for now.
>
>
>
> Lori Shepherd - Kern
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> 
> From: Bioc-devel  on behalf of Richard
> Heery 
> Sent: Sunday, January 7, 2024 7:17 AM
> To: bioc-devel@r-project.org 
> Subject: [Bioc-devel] Single Package Builder failing to detect
> subscription to the Bioc-devel mailing list
>
> Hi all,
>
> My package submission is repeatedly failing due to an error saying I am not
> subscribed to the Bioc-devel mailing list, even though I am subscribed
> using this email. This is the same email I have in the DESCRIPTION file and
> also as my git user.email both globally and locally in the repository. Any
> ideas what could be causing this?
>
> Cheers,
>
> Richard
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
>
> https://secure-web.cisco.com/1bwFRglsu5TtZVWWu4cPjyLXP4fcP2PsmUHOL4HxHAZSur69I7deMtKaMIKT3SneN_1ejbpIQPconydf00C1gZ48n6-mHywHpyOfldW39t51N8saYvfOxUxOYVZYINzSIAxhqFIyAy0XSsKbt0FpUiPukL6aFscuh3xIFCAr7htgmNnWVGezwZi6W4k8eU3MiGyfjXMH2QTG3oO2hD-GVTF38NwebfCMJtsdtmGpZrzqmYwrfUQtro2n5uEYIIJ4I5Gs8nrOuI9PIGHpNcZiFvYDbiqkyBeI4NBeX9eqa03Te4QBVNSqOQ2TTw3LJmu16/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>
>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
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>

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