[Bioc-devel] Failed to activate account for Bioconductor git credentials

[Ning Liu via Bioc-devel]

Hi,

I�m the maintainer for standR and hoodscanR packages.

I recently changed my work laptop and now found that I don�t have the access to 
upstream, i.e. 
g...@git.bioconductor.org:packages/standR.git
 and 
g...@git.bioconductor.org:packages/hoodscanR.git
 anymore, getting this error:
g...@git.bioconductor.org: Permission denied (publickey).
fatal: Could not read from remote repository.

I�ve updated the ssh key in my github account to with my new laptop�s public 
key. But I�m having trouble to login to 
https://git.bioconductor.org/BiocCredentials/login/?next=/BiocCredentials/ to 
manage my credentials, when I tried to activate my account it said 
�li...@wehi.edu.au is not associated with a maintainer of a Bioconductor 
package.�

Can you help me with this?

Cheers,
Ning

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Re: [Bioc-devel] Deprecation Request for openPrimeRui

[Neumann, Steffen]

Hi Matthias,

I have a (non-BioC) package depending on ShinyBS,
could you give a hint what to watch out for that's working different as
expected ? Any suggestion what to use as replacement ?

Thanks in advance,
Danke,
Steffen

On Sat, 2024-01-13 at 22:48 +0100, Matthias Döring via Bioc-devel
wrote:
> Dear BioC Team,
>
> I'd like to request deprecation of the openPrimeRui package. The
> Shiny
> App no longer works properly since one of its dependencies, ShinyBS,
> is
> no longer working as expected.
>
> Best wishes,
>
> Matthias
>
> P.S. Of course, if another maintainer could be found to adjust the
> Shiny
> App, this would be even better.
>
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[Bioc-devel] [question about class extension]

[Delphine Charif]

Dear Bioc developer,

We are developing a package and have used the MultiAssayExperiment class to 
manage our data.
We need to impose a particular structure on the slot metadata of the MAE object 
(list => named list)
because we havec defined methods that depend on this named list.
Is it good practice to extend the MAE class for the specificity of our metadata 
structure or is it better
to define new methods applying to a MAE object  (and check the metadata 
structure )?

Thanks in advance,






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