Re: [Bioc-devel] Windows build error for outdated Shiny package
Dear Martin,
Thanks very much.
Best Regards,
Chen Hao
> On 24 Sep 2016, at 5:44 PM, Martin Morgan
> wrote:
>
> On 09/24/2016 05:43 AM, Nuno Agostinho wrote:
>> Good evening,
>>
>> I recently submitted a package to Bioconductor. Unfortunately, the Windows
>> machine (moscato1) returned the following error while building the package:
>> Error : package 'shiny' 0.13.2 was found, but >= 0.14 is required by
>> 'psichomics'
>>
>> The issue related to the package in question is
>> https://github.com/Bioconductor/Contributions/issues/139
>>
>> I require version 0.14 for some of the features it introduced. What can I do
>> to fix this error?
>> Thanks in advance.
>
> you can't do anything; it will be addressed on our end. You and your
> reviewer can ignore it for now.
>
> Martin
>
>>
>> Best regards,
>> Nuno Agostinho
>>
>> [[alternative HTML version deleted]]
>>
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>>
>
>
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Re: [Bioc-devel] New package deadline for this release: 26 September
Dear Martin and core members,
We have a package named uSORT submitted to Bioconductor through GitHub half a
month ago, FYI
* Github Link: <https://github.com/JinmiaoChenLab/uSORT>
* Bioconductor submission track:
<https://github.com/Bioconductor/Contributions/issues/104>
Now the checking report shows one warning, which is caused by the no DISPLAY
variable so Tk is not available on the linux platform. Our package includes a
GUI which is built on tcltk. Can you help that how I can get around this
warning?
Thanks a lot.
Best Regards,
Chen Hao
On 17 Sep 2016, at 3:14 AM, Martin Morgan
mailto:martin.mor...@roswellpark.org>> wrote:
Developers!
If you would like your new package to be included in the next release,
you must open an issue at
https://github.com/Bioconductor/Contributions/
by 26 September. The full release schedule is at
http://bioconductor.org/developers/release-schedule/
Best wishes,
Martin Morgan
Bioconductor
This email message may contain legally privileged and/or...{{dropped:2}}
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Re: [Bioc-devel] Build reports not updated
Dear Herve, Thanks very much, the latest version 1.4.8 is online now. Best Regards, Chen Hao On 12 Jul 2016, at 2:39 AM, Hervé Pagès mailto:hpa...@fredhutch.org>> wrote: Hi Chen Hao, The script that takes care of propagating the packages didn't run properly. This should be fixed now and the new version of cytofkit (1.4.8) will become available in the next hour or so. Cheers, H. On 07/10/2016 06:33 PM, Chen Hao wrote: Dear Bioconductor core team, My latest commit of package cytofkit (version 1.4.8) to Bioconductor was built successfully according to the report http://bioconductor.org/checkResults/release/bioc-LATEST/cytofkit/. However the web page still present the old version (1.4.7) https://www.bioconductor.org/packages/release/bioc/html/cytofkit.html. Could you help take a look? We have an urgent need to provide the latest version (1.4.8) for a journal paper review. Thanks very much. Best Regards, Chen Hao On 8 Jul 2016, at 1:52 PM, Monther Alhamdoosh mailto:m.hamdo...@gmail.com> <mailto:m.hamdo...@gmail.com>> wrote: Hi Chen, You may check now. My package was built last night. Cheers, Monther On Fri, Jul 8, 2016 at 3:43 PM, Chen Hao mailto:chen_...@immunol.a-star.edu.sg> <mailto:chen_...@immunol.a-star.edu.sg>> wrote: Dear Monther, There seems no building yesterday. Do you have any good news for the next building? I have a package(cytofkit) with important updating need to replaced the old one. Best Regards, Chen Hao On 7 Jul 2016, at 8:57 AM, Hervé Pagès mailto:hpa...@fredhutch.org> <mailto:hpa...@fredhutch.org>> wrote: Hi Monther, On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote: I just noticed that the latest snapshot of the build reports was based on Sunday 3rd. Has been any change to the building cycle of software packages? No changes to the build schedule. We're still trying to run the software builds every day but have had many fatal build system failures in the last 3 weeks or so. As a result, we've had many days without an updated build report. The situation is particularly serious on Windows (moscato1) where we haven't been able to complete a full build run for at least 3 weeks. We're actively working on this. Hopefully we'll have an updated build report tomorrow (Jul 7). If we are lucky, it might even contain results for Windows. Fingers crossed... H. Cheers, Monther [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> <mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org<mailto:hpa...@fredhutch.org> <mailto:hpa...@fredhutch.org> Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> <mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org<mailto:hpa...@fredhutch.org> Phone: (206) 667-5791 Fax:(206) 667-1319 [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Build reports not updated
Dear Bioconductor core team, My latest commit of package cytofkit (version 1.4.8) to Bioconductor was built successfully according to the report http://bioconductor.org/checkResults/release/bioc-LATEST/cytofkit/. However the web page still present the old version (1.4.7) https://www.bioconductor.org/packages/release/bioc/html/cytofkit.html. Could you help take a look? We have an urgent need to provide the latest version (1.4.8) for a journal paper review. Thanks very much. Best Regards, Chen Hao On 8 Jul 2016, at 1:52 PM, Monther Alhamdoosh mailto:m.hamdo...@gmail.com>> wrote: Hi Chen, You may check now. My package was built last night. Cheers, Monther On Fri, Jul 8, 2016 at 3:43 PM, Chen Hao mailto:chen_...@immunol.a-star.edu.sg>> wrote: Dear Monther, There seems no building yesterday. Do you have any good news for the next building? I have a package(cytofkit) with important updating need to replaced the old one. Best Regards, Chen Hao > On 7 Jul 2016, at 8:57 AM, Hervé Pagès > mailto:hpa...@fredhutch.org>> wrote: > > Hi Monther, > > On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote: >> I just noticed that the latest snapshot of the build reports was based on >> Sunday 3rd. Has been any change to the building cycle of software packages? > > No changes to the build schedule. We're still trying to run the software > builds every day but have had many fatal build system failures in the > last 3 weeks or so. As a result, we've had many days without an updated > build report. The situation is particularly serious on Windows > (moscato1) where we haven't been able to complete a full build run > for at least 3 weeks. We're actively working on this. > > Hopefully we'll have an updated build report tomorrow (Jul 7). If we > are lucky, it might even contain results for Windows. Fingers crossed... > > H. > >> >> Cheers, >> Monther >> >> [[alternative HTML version deleted]] >> >> ___ >> Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org<mailto:hpa...@fredhutch.org> > Phone: (206) 667-5791 > Fax:(206) 667-1319 > > ___ > Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Build reports not updated
Dear Monther, There seems no building yesterday. Do you have any good news for the next building? I have a package(cytofkit) with important updating need to replaced the old one. Best Regards, Chen Hao > On 7 Jul 2016, at 8:57 AM, Hervé Pagès wrote: > > Hi Monther, > > On 07/06/2016 05:05 PM, Monther Alhamdoosh wrote: >> I just noticed that the latest snapshot of the build reports was based on >> Sunday 3rd. Has been any change to the building cycle of software packages? > > No changes to the build schedule. We're still trying to run the software > builds every day but have had many fatal build system failures in the > last 3 weeks or so. As a result, we've had many days without an updated > build report. The situation is particularly serious on Windows > (moscato1) where we haven't been able to complete a full build run > for at least 3 weeks. We're actively working on this. > > Hopefully we'll have an updated build report tomorrow (Jul 7). If we > are lucky, it might even contain results for Windows. Fingers crossed... > > H. > >> >> Cheers, >> Monther >> >> [[alternative HTML version deleted]] >> >> ___ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax:(206) 667-1319 > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
