[Bioc-devel] Changing package names
Hello all, My submitted package BentoBox and its associated data package BentoBoxData have been accepted and were just added to Bioconductor's git repository. Unfortunately, my group and I would like to change the names of these packages/repositories. What would be the appropriate process to change the names of these packages if they are already in Bioconductor's git repository? Thank you, Nicole Kramer Nicole Kramer Ph.D. Student in Bioinformatics and Computational Biology University of North Carolina at Chapel Hill nekra...@live.unc.edu [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor repositories
Hi Nitesh, Thank you for all your help! Best, Nicole -- Nicole Kramer Ph.D. Student in Bioinformatics and Computational Biology University of North Carolina at Chapel Hill nekra...@live.unc.edu From: Nitesh Turaga Sent: Monday, July 26, 2021 6:33 PM To: Kramer, Nicole Emma Cc: bioc-devel Subject: Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor repositories Hello, Please take a look at http://bioconductor.org/developers/how-to/git/faq/ #13 onwards to see if any of those issues fix your problem. There is nothing wrong on our end. Best, Nitesh Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute > On Jul 26, 2021, at 6:28 PM, Kramer, Nicole Emma > wrote: > > I've also been having issues pushing to the BentoBoxData git.bioconductor.org > repo, but I do not have trouble with the BentoBox repo. Do I have the correct > permissions? > > Thank you, > Nicole > > -- > Nicole Kramer > Ph.D. Student in Bioinformatics and Computational Biology > University of North Carolina at Chapel Hill > nekra...@live.unc.edu > From: Nitesh Turaga > Sent: Monday, July 26, 2021 4:48 PM > To: Kramer, Nicole Emma > Cc: bioc-devel > Subject: Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor > repositories > > Hi Nicole, > > Please sync your two repos now. You should be all set. > > Best, > > Nitesh Turaga > Scientist II, Department of Data Science, > Bioconductor Core Team Member > Dana Farber Cancer Institute > > > On Jul 26, 2021, at 12:44 PM, Kramer, Nicole Emma > > wrote: > > > > Hi Nitesh, > > > > Thank you so much! > > > > Best, > > Nicole > > > > -- > > Nicole Kramer > > Ph.D. Student in Bioinformatics and Computational Biology > > University of North Carolina at Chapel Hill > > nekra...@live.unc.edu > > From: Nitesh Turaga > > Sent: Monday, July 26, 2021 11:21 AM > > To: Kramer, Nicole Emma > > Cc: bioc-devel@r-project.org > > Subject: Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor > > repositories > > > > Hi Nicole, > > > > Thank you for cleaning the repos. > > > > I will do the force push for you, but you will have to re-sync the Github > > repo once it�s done. > > > > I�ll email you as soon as I�m done with the force push. > > > > Best, > > > > Nitesh > > > > Nitesh Turaga > > Scientist II, Department of Data Science, > > Bioconductor Core Team Member > > Dana Farber Cancer Institute > > > > > On Jul 24, 2021, at 6:54 PM, Kramer, Nicole Emma > > > wrote: > > > > > > Hello, > > > > > > I am in the review process for the packages BentoBoxData and BentoBox and > > > I am attempting to make changes to these packages. However, they have > > > been cleaned for large data files and need to be reset at their > > > git.bioconductor.org locations. Would I be able to get these repos force > > > pushed? > > > > > > Thank you, > > > Nicole Kramer > > > > > > > > > -- > > > > > > Nicole Kramer > > > > > > Ph.D. Student in Bioinformatics and Computational Biology > > > > > > University of North Carolina at Chapel Hill > > > > > > nekra...@live.unc.edu > > > > > >[[alternative HTML version deleted]] > > > > > > ___ > > > Bioc-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor repositories
I've also been having issues pushing to the BentoBoxData git.bioconductor.org repo, but I do not have trouble with the BentoBox repo. Do I have the correct permissions? Thank you, Nicole -- Nicole Kramer Ph.D. Student in Bioinformatics and Computational Biology University of North Carolina at Chapel Hill nekra...@live.unc.edu From: Nitesh Turaga Sent: Monday, July 26, 2021 4:48 PM To: Kramer, Nicole Emma Cc: bioc-devel Subject: Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor repositories Hi Nicole, Please sync your two repos now. You should be all set. Best, Nitesh Turaga Scientist II, Department of Data Science, Bioconductor Core Team Member Dana Farber Cancer Institute > On Jul 26, 2021, at 12:44 PM, Kramer, Nicole Emma > wrote: > > Hi Nitesh, > > Thank you so much! > > Best, > Nicole > > -- > Nicole Kramer > Ph.D. Student in Bioinformatics and Computational Biology > University of North Carolina at Chapel Hill > nekra...@live.unc.edu > From: Nitesh Turaga > Sent: Monday, July 26, 2021 11:21 AM > To: Kramer, Nicole Emma > Cc: bioc-devel@r-project.org > Subject: Re: [Bioc-devel] BentoBox and BentoBoxData git.bioconductor > repositories > > Hi Nicole, > > Thank you for cleaning the repos. > > I will do the force push for you, but you will have to re-sync the Github > repo once it�s done. > > I�ll email you as soon as I�m done with the force push. > > Best, > > Nitesh > > Nitesh Turaga > Scientist II, Department of Data Science, > Bioconductor Core Team Member > Dana Farber Cancer Institute > > > On Jul 24, 2021, at 6:54 PM, Kramer, Nicole Emma > > wrote: > > > > Hello, > > > > I am in the review process for the packages BentoBoxData and BentoBox and I > > am attempting to make changes to these packages. However, they have been > > cleaned for large data files and need to be reset at their > > git.bioconductor.org locations. Would I be able to get these repos force > > pushed? > > > > Thank you, > > Nicole Kramer > > > > > > -- > > > > Nicole Kramer > > > > Ph.D. Student in Bioinformatics and Computational Biology > > > > University of North Carolina at Chapel Hill > > > > nekra...@live.unc.edu > > > >[[alternative HTML version deleted]] > > > > ___ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] BentoBox and BentoBoxData git.bioconductor repositories
Hello, I am in the review process for the packages BentoBoxData and BentoBox and I am attempting to make changes to these packages. However, they have been cleaned for large data files and need to be reset at their git.bioconductor.org locations. Would I be able to get these repos force pushed? Thank you, Nicole Kramer -- Nicole Kramer Ph.D. Student in Bioinformatics and Computational Biology University of North Carolina at Chapel Hill nekra...@live.unc.edu [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
