Re: [Bioc-devel] SVN and GitHub mirror out-of-sync
On Montag, 18. April 2016 08:10:12 CEST Dan Tenenbaum wrote: > Should be caught up now. > Dan hi, i have the same problem with destiny: the newest commits appear in the SVN but not github (DESCRIPTION has 1.3.3 vs. 1.3.0) SVN: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/destiny/ Git: https://github.com/Bioconductor-mirror/destiny thanks, philipp Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Dr. Alfons Enhsen, Renate Schlusen (komm.) Registergericht: Amtsgericht Muenchen HRB 6466 USt-IdNr: DE 129521671 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] include .DollarNames.ExpressionSet in Biobase?
Hi, the S3 generic .DollarNames is used to create tab completions in the R command line and RStudio. since you can access featureData(es)$feature via es$feature, it would be useful to either implement .DollarNames.ExpressionSet or simply names.ExpressionSet I couldn’t find a bug tracker for BioConductor, so i posted this here. Best, Philipp Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Dr. Nikolaus Blum, Dr. Alfons Enhsen Registergericht: Amtsgericht Muenchen HRB 6466 USt-IdNr: DE 129521671 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Shouldn't we distinguish between package-specific and dependency errors?]
On Thursday 24 September 2015 19:54:04 Ludwig Geistlinger wrote: > Well, I guess, Dan, that basically means that breaking cannot happen > within Bioc (as broken packages do not propagate to the repository) and > such cases are exclusively due to breaking of external dependencies such > as observed with KEGGREST and KEGG (where we can hardly do much about it). > > Thus, it remains to clarify on the purpose of the “build” shield as > Wolfgang pointed out. > While it is surely helpful for the developer to grasp what is going on at > a glance, this might be misleading for users and reviewers as described > earlier. > > Ludwig The build sheet isn’t completely indicative of a package being good to go or not: As the team has assured me, builds failing because the “perceval” machine can’t handle C++11 are no problem. Best, p Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Dr. Nikolaus Blum, Dr. Alfons Enhsen Registergericht: Amtsgericht Muenchen HRB 6466 USt-IdNr: DE 129521671 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
