Re: [Bioc-devel] [Bioc-deve] Check package status / built report
Additionally, Please make sure to do a valid version bump. I took a peak on our git.bioconductor.org server and do see the changes pushed but it does not appear that it included a valid version bump from 1.17.0 to 1.17.1 . Without a valid version bump the most recent version will not propagate for availability to the end users. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Kern, Lori Sent: Tuesday, March 2, 2021 7:19 AM To: Stadler, Michael ; Ines de Santiago ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] [Bioc-deve] Check package status / built report Michael is right. Additionally there is some information on the timing of pushing / pulling of the build system on the top of this page: bioconductor.org/developers/how-to/troubleshoot-build-report/ While its possible you made the changes in time for today's report, Most likely the changes will be reflected in tomorrow March 3rd report. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Stadler, Michael Sent: Tuesday, March 2, 2021 3:38 AM To: Ines de Santiago ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] [Bioc-deve] Check package status / built report Hello Ines This is not how the builds of accepted packages work. The builds run once a day, and depending when the builders pull the contents from git.bioconductor.org (see date and time at the top of https://secure-web.cisco.com/1LNL1nX-IwKA1-4HlWKL2nfDRf5ts2HAUF_LnBW0kxCt17mKOoi_imtDto4zhj9kdT6eQ2YJ3yWFkxeowb8yQQN15fH4ZQ6SloImjuRZfdUisqoFJ6PYeooOqGW9A4Lp5khGSjfKpt3ZPdQRnXDCoPnG_cPWLxRPSIQksMykiHJrBMbSNpEvo5x0unrc2jL2IlTi1kXMEDUuB8L9KTn6SEwCAw3RtA4vTzaTpTiXnpvt5EZp5e_EJfpa4_hTHCobGnjlUjYvGWLOugml9d_f4vDC7AVIJFtI9P_oAWP-9Fb_uGGazrsuJvHf3gugHUA2X/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.13%2Fbioc-LATEST%2Findex.html), your changes may not be reflected in that build yet. Regards, Michael -Urspr�ngliche Nachricht- Von: Bioc-devel Im Auftrag von Ines de Santiago Gesendet: Dienstag, 2. M�rz 2021 09:33 An: bioc-devel@r-project.org Betreff: [Bioc-devel] [Bioc-deve] Check package status / built report Hello. I updated my package and pushed the changes to bioconductor github Everything went smoothly with no errors, git clone g...@git.bioconductor.org:packages/BaalChIP (changes... add.. rename origin...etc) git push upstream master I thought that by pushing to bioconductor github it would trigger the package Built process. however, when I go to the webpage: https://secure-web.cisco.com/1LNL1nX-IwKA1-4HlWKL2nfDRf5ts2HAUF_LnBW0kxCt17mKOoi_imtDto4zhj9kdT6eQ2YJ3yWFkxeowb8yQQN15fH4ZQ6SloImjuRZfdUisqoFJ6PYeooOqGW9A4Lp5khGSjfKpt3ZPdQRnXDCoPnG_cPWLxRPSIQksMykiHJrBMbSNpEvo5x0unrc2jL2IlTi1kXMEDUuB8L9KTn6SEwCAw3RtA4vTzaTpTiXnpvt5EZp5e_EJfpa4_hTHCobGnjlUjYvGWLOugml9d_f4vDC7AVIJFtI9P_oAWP-9Fb_uGGazrsuJvHf3gugHUA2X/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.13%2Fbioc-LATEST%2Findex.html I still see my package with the same "WARNINGS" Am I checking in the right place? [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1etCNzCKF0J3O3K93bbbQeolCpGcB7xIpZkjnIy5ZWx0SAWJ4XxJB_gY2lLWRHRi1-3Cld-XtBeYXmNcak3Yi7YOkAsPQ0_gDBEAsXxooihajvdoBsbpkP-Ik3vaqMizT4MhBDrWFNMIhH9dsu1wQoo9kF0MI_eZu05ymnZ3_1BGHD1dL_oYkDuNt2-hT_Jym02Ib4p8UJlgBPqB7e49Gs1tbQ6FSfzg-_we4reBuw2SmYGEjR-n83bq15Hia-6-_E8Mso4B7GMkOAKOFANqKj3qS8Cp7DWlmLzQrr7BnugtAhC6QfoBQisSwu_eeskn7/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1etCNzCKF0J3O3K93bbbQeolCpGcB7xIpZkjnIy5ZWx0SAWJ4XxJB_gY2lLWRHRi1-3Cld-XtBeYXmNcak3Yi7YOkAsPQ0_gDBEAsXxooihajvdoBsbpkP-Ik3vaqMizT4MhBDrWFNMIhH9dsu1wQoo9kF0MI_eZu05ymnZ3_1BGHD1dL_oYkDuNt2-hT_Jym02Ib4p8UJlgBPqB7e49Gs1tbQ6FSfzg-_we4reBuw2SmYGEjR-n83bq15Hia-6-_E8Mso4B7GMkOAKOFANqKj3qS8Cp7DWlmLzQrr7BnugtAhC6QfoBQisSwu_eeskn7/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _
Re: [Bioc-devel] [Bioc-deve] Check package status / built report
Michael is right. Additionally there is some information on the timing of pushing / pulling of the build system on the top of this page: bioconductor.org/developers/how-to/troubleshoot-build-report/ While its possible you made the changes in time for today's report, Most likely the changes will be reflected in tomorrow March 3rd report. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Stadler, Michael Sent: Tuesday, March 2, 2021 3:38 AM To: Ines de Santiago ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] [Bioc-deve] Check package status / built report Hello Ines This is not how the builds of accepted packages work. The builds run once a day, and depending when the builders pull the contents from git.bioconductor.org (see date and time at the top of https://secure-web.cisco.com/1LNL1nX-IwKA1-4HlWKL2nfDRf5ts2HAUF_LnBW0kxCt17mKOoi_imtDto4zhj9kdT6eQ2YJ3yWFkxeowb8yQQN15fH4ZQ6SloImjuRZfdUisqoFJ6PYeooOqGW9A4Lp5khGSjfKpt3ZPdQRnXDCoPnG_cPWLxRPSIQksMykiHJrBMbSNpEvo5x0unrc2jL2IlTi1kXMEDUuB8L9KTn6SEwCAw3RtA4vTzaTpTiXnpvt5EZp5e_EJfpa4_hTHCobGnjlUjYvGWLOugml9d_f4vDC7AVIJFtI9P_oAWP-9Fb_uGGazrsuJvHf3gugHUA2X/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.13%2Fbioc-LATEST%2Findex.html), your changes may not be reflected in that build yet. Regards, Michael -Urspr�ngliche Nachricht- Von: Bioc-devel Im Auftrag von Ines de Santiago Gesendet: Dienstag, 2. M�rz 2021 09:33 An: bioc-devel@r-project.org Betreff: [Bioc-devel] [Bioc-deve] Check package status / built report Hello. I updated my package and pushed the changes to bioconductor github Everything went smoothly with no errors, git clone g...@git.bioconductor.org:packages/BaalChIP (changes... add.. rename origin...etc) git push upstream master I thought that by pushing to bioconductor github it would trigger the package Built process. however, when I go to the webpage: https://secure-web.cisco.com/1LNL1nX-IwKA1-4HlWKL2nfDRf5ts2HAUF_LnBW0kxCt17mKOoi_imtDto4zhj9kdT6eQ2YJ3yWFkxeowb8yQQN15fH4ZQ6SloImjuRZfdUisqoFJ6PYeooOqGW9A4Lp5khGSjfKpt3ZPdQRnXDCoPnG_cPWLxRPSIQksMykiHJrBMbSNpEvo5x0unrc2jL2IlTi1kXMEDUuB8L9KTn6SEwCAw3RtA4vTzaTpTiXnpvt5EZp5e_EJfpa4_hTHCobGnjlUjYvGWLOugml9d_f4vDC7AVIJFtI9P_oAWP-9Fb_uGGazrsuJvHf3gugHUA2X/https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.13%2Fbioc-LATEST%2Findex.html I still see my package with the same "WARNINGS" Am I checking in the right place? [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1etCNzCKF0J3O3K93bbbQeolCpGcB7xIpZkjnIy5ZWx0SAWJ4XxJB_gY2lLWRHRi1-3Cld-XtBeYXmNcak3Yi7YOkAsPQ0_gDBEAsXxooihajvdoBsbpkP-Ik3vaqMizT4MhBDrWFNMIhH9dsu1wQoo9kF0MI_eZu05ymnZ3_1BGHD1dL_oYkDuNt2-hT_Jym02Ib4p8UJlgBPqB7e49Gs1tbQ6FSfzg-_we4reBuw2SmYGEjR-n83bq15Hia-6-_E8Mso4B7GMkOAKOFANqKj3qS8Cp7DWlmLzQrr7BnugtAhC6QfoBQisSwu_eeskn7/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1etCNzCKF0J3O3K93bbbQeolCpGcB7xIpZkjnIy5ZWx0SAWJ4XxJB_gY2lLWRHRi1-3Cld-XtBeYXmNcak3Yi7YOkAsPQ0_gDBEAsXxooihajvdoBsbpkP-Ik3vaqMizT4MhBDrWFNMIhH9dsu1wQoo9kF0MI_eZu05ymnZ3_1BGHD1dL_oYkDuNt2-hT_Jym02Ib4p8UJlgBPqB7e49Gs1tbQ6FSfzg-_we4reBuw2SmYGEjR-n83bq15Hia-6-_E8Mso4B7GMkOAKOFANqKj3qS8Cp7DWlmLzQrr7BnugtAhC6QfoBQisSwu_eeskn7/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] [Bioc-deve] Check package status / built report
Hello Ines This is not how the builds of accepted packages work. The builds run once a day, and depending when the builders pull the contents from git.bioconductor.org (see date and time at the top of https://master.bioconductor.org/checkResults/3.13/bioc-LATEST/index.html), your changes may not be reflected in that build yet. Regards, Michael -Ursprüngliche Nachricht- Von: Bioc-devel Im Auftrag von Ines de Santiago Gesendet: Dienstag, 2. März 2021 09:33 An: bioc-devel@r-project.org Betreff: [Bioc-devel] [Bioc-deve] Check package status / built report Hello. I updated my package and pushed the changes to bioconductor github Everything went smoothly with no errors, git clone g...@git.bioconductor.org:packages/BaalChIP (changes... add.. rename origin...etc) git push upstream master I thought that by pushing to bioconductor github it would trigger the package Built process. however, when I go to the webpage: https://master.bioconductor.org/checkResults/3.13/bioc-LATEST/index.html I still see my package with the same "WARNINGS" Am I checking in the right place? [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] [Bioc-deve] Check package status / built report
Hello. I updated my package and pushed the changes to bioconductor github Everything went smoothly with no errors, git clone g...@git.bioconductor.org:packages/BaalChIP (changes... add.. rename origin...etc) git push upstream master I thought that by pushing to bioconductor github it would trigger the package Built process. however, when I go to the webpage: https://master.bioconductor.org/checkResults/3.13/bioc-LATEST/index.html I still see my package with the same "WARNINGS" Am I checking in the right place? [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
