[Bioc-devel] About Adding SSH Keys to GitHub Account
Hi, All I'm trying to submit my R/Bioconductor package by Bioconductor/Contributions https://github.com/Bioconductor/Contributions/issues/787 The process looks properly going well, but "1. awaiting moderation" label is added, because the message says "Add SSH keys to your GitHub account." Actually, I still added some SSH keys to GitHub. Is this caused by my some mistake, or is this caused by the difference between organization account "rikenbit" and my account "kokitsuyuzaki"? Or do I have to wait for the process for some hours? Koki Tsuyuzaki [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Hi Koki --
The 'moderation' step requires a human to actually look at your
repository. Usually it is quick, but sometimes it can take up to a day.
Your package has been moderated and a reviewer assigned to it; further
instructions (basically, wait for up to two weeks while the reviewer
looks at your package in more detail) are in the comment posted to the
issue.
Martin
On 06/27/2018 10:38 PM, 露崎 弘毅 wrote:
Hi, All
I'm trying to submit my R/Bioconductor package by Bioconductor/Contributions
https://github.com/Bioconductor/Contributions/issues/787
The process looks properly going well,
but "1. awaiting moderation" label is added,
because the message says
"Add SSH keys to your GitHub account."
Actually, I still added some SSH keys to GitHub.
Is this caused by my some mistake,
or is this caused by the difference between organization account "rikenbit" and my
account "kokitsuyuzaki"?
Or do I have to wait for the process for some hours?
Koki Tsuyuzaki
[[alternative HTML version deleted]]
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
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___
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Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Hi, Martin Thanks for quick reply. Ok, I'll wait for the review. Thanks, Koki �: Martin Morgan : 2018Ҵ6��28�� 19:59 ���: ; Bioc-devel@r-project.org ��٣: Re: [Bioc-devel] About Adding SSH Keys to GitHub Account Hi Koki -- The 'moderation' step requires a human to actually look at your repository. Usually it is quick, but sometimes it can take up to a day. Your package has been moderated and a reviewer assigned to it; further instructions (basically, wait for up to two weeks while the reviewer looks at your package in more detail) are in the comment posted to the issue. Martin On 06/27/2018 10:38 PM, wrote: > Hi, All > > > I'm trying to submit my R/Bioconductor package by Bioconductor/Contributions > > https://github.com/Bioconductor/Contributions/issues/787 [https://avatars3.githubusercontent.com/u/2173745?s=400&v=4]<https://github.com/Bioconductor/Contributions/issues/787> LRBaseDbi �� Issue #787 �� Bioconductor/Contributions<https://github.com/Bioconductor/Contributions/issues/787> github.com Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor Repository: https://github.com/rikenbit/LRBaseDbi Confirm the following by editing each ... > > > The process looks properly going well, > > but "1. awaiting moderation" label is added, > > because the message says > > "Add SSH keys to your GitHub account." > > > > Actually, I still added some SSH keys to GitHub. > > > Is this caused by my some mistake, > > or is this caused by the difference between organization account "rikenbit" > and my account "kokitsuyuzaki"? > > > Or do I have to wait for the process for some hours? > > > > Koki Tsuyuzaki > > >[[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Please be sure to 'reply all' so that others in similar situations can
benefit.
If you incremented the version but the single package builder did not
start a build, the most likely reason is because the webhook is not
correct. See
https://github.com/Bioconductor/Contributions#adding-a-web-hook
See also the 'additional actions' section for hints on debugging the web
hook.
Martin
On 07/02/2018 10:13 PM, 露崎 弘毅 wrote:
Hi, Martin
Sorry to keep bothering you.
The label "1. awaiting moderation" is changed into "2. review in progress".
bioc-issue-bot tell me that the build results were: "WARNINGS".
I confirm the build report page (
http://bioconductor.org/spb_reports/LRBaseDbi_buildreport_20180628070303.html
), and understand the reason of WARNING, so I modified the part and
bumped the version (v-0.99.0 → v-0.99.1).
By the way, how the "Bioconductor Single Package Builder" recognizes the
version of package is updated?
I commited the new version of LRBaseDbi to the GitHub repository (
https://github.com/rikenbit/LRBaseDbi ), but it seems that the build
won't re-run ( https://github.com/Bioconductor/Contributions/issues/787 ).
Thanks,
Koki
*差出人:* Bioc-devel が 露崎 弘毅
の代理で送信
*送信日時:* 2018年6月28日 20:56
*宛先:* Martin Morgan; Bioc-devel@r-project.org
*件名:* Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Hi, Martin
Thanks for quick reply.
Ok, I'll wait for the review.
Thanks,
Koki
�: Martin Morgan
: 2018Ҵ6��28�� 19:59
���: ���� ; Bioc-devel@r-project.org
��٣: Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Hi Koki --
The 'moderation' step requires a human to actually look at your
repository. Usually it is quick, but sometimes it can take up to a day.
Your package has been moderated and a reviewer assigned to it; further
instructions (basically, wait for up to two weeks while the reviewer
looks at your package in more detail) are in the comment posted to the
issue.
Martin
On 06/27/2018 10:38 PM, wrote:
Hi, All
I'm trying to submit my R/Bioconductor package by Bioconductor/Contributions
https://github.com/Bioconductor/Contributions/issues/787
<https://github.com/Bioconductor/Contributions/issues/787>
LRBaseDbi · Issue #787 · Bioconductor/Contributions
<https://github.com/Bioconductor/Contributions/issues/787>
github.com
Update the following URL to point to the GitHub repository of the
package you wish to submit to Bioconductor Repository:
https://github.com/rikenbit/LRBaseDbi Confirm the following by editing
each ...
[https://avatars3.githubusercontent.com/u/2173745?s=400&v=4]<https://github.com/Bioconductor/Contributions/issues/787>
LRBaseDbi �� Issue #787 ��
Bioconductor/Contributions<https://github.com/Bioconductor/Contributions/issues/787>
github.com
Update the following URL to point to the GitHub repository of the
package you wish to submit to Bioconductor Repository:
https://github.com/rikenbit/LRBaseDbi Confirm the following by editing
each ...
The process looks properly going well,
but "1. awaiting moderation" label is added,
because the message says
"Add SSH keys to your GitHub account."
Actually, I still added some SSH keys to GitHub.
Is this caused by my some mistake,
or is this caused by the difference between organization account "rikenbit" and my
account "kokitsuyuzaki"?
Or do I have to wait for the process for some hours?
Koki Tsuyuzaki
[[alternative HTML version deleted]]
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee
or agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have
received this message in error, please notify the sender immediately by
e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
This email message may contain legally privileged and/or...{{dropped:2}}
___
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Re: [Bioc-devel] About Adding SSH Keys to GitHub Account
Hi, Martin and All Sorry for forgetting "reply all". After setting the web-hook, build system properly recongnizes the version change of my package. However, another error message is generated, the build results were: "ERROR". https://github.com/Bioconductor/Contributions/issues/787 I checked the build report (http://bioconductor.org/spb_reports/LRBaseDbi_buildreport_20180704195929.html) and found that R CMD BiocCheck is failed. The error message says, * ERROR: Vignette must be built by 'R CMD build'. Please see the `Vignette Checks` section of the BiocCheck vignette. so I checked the BiocCheck vignette (https://bioconductor.org/packages/release/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html), but any case seems to be different from mine. My package has vignettes and inst/doc directories and I saved only .Rnw file. The line "* creating vignettes ..." is actually generated when performing R CMD BUILD, and I also properly added VignetteBuilder and VignetteEngine. R CMD BiocCheck seems to search the line "* creating vignettes ..." in the file R.out, but how this file is generated? Do you have any idea how can I modified the error? Thanks, Koki 差出人: Martin Morgan 送信日時: 2018年7月3日 21:08 宛先: 露崎 弘毅; bioc-devel 件名: Re: [Bioc-devel] About Adding SSH Keys to GitHub Account Please be sure to 'reply all' so that others in similar situations can benefit. If you incremented the version but the single package builder did not start a build, the most likely reason is because the webhook is not correct. See https://github.com/Bioconductor/Contributions#adding-a-web-hook [https://avatars2.githubusercontent.com/u/2286807?s=400&v=4]<https://github.com/Bioconductor/Contributions#adding-a-web-hook> GitHub - Bioconductor/Contributions: Contribute Packages ...<https://github.com/Bioconductor/Contributions#adding-a-web-hook> github.com GitHub is where people build software. More than 28 million people use GitHub to discover, fork, and contribute to over 85 million projects. See also the 'additional actions' section for hints on debugging the web hook. Martin On 07/02/2018 10:13 PM, 露崎 弘毅 wrote: > Hi, Martin > > > Sorry to keep bothering you. > > > The label "1. awaiting moderation" is changed into "2. review in progress". > > > bioc-issue-bot tell me that the build results were: "WARNINGS". > > > I confirm the build report page ( > http://bioconductor.org/spb_reports/LRBaseDbi_buildreport_20180628070303.html > ), and understand the reason of WARNING, so I modified the part and > bumped the version (v-0.99.0 → v-0.99.1). > > > By the way, how the "Bioconductor Single Package Builder" recognizes the > version of package is updated? > > > I commited the new version of LRBaseDbi to the GitHub repository ( > https://github.com/rikenbit/LRBaseDbi ), but it seems that the build > won't re-run ( https://github.com/Bioconductor/Contributions/issues/787 ). > > > > Thanks, > > > Koki > > > -------- > *差出人:* Bioc-devel が 露崎 弘毅 > の代理で送信 > *送信日時:* 2018年6月28日 20:56 > *宛先:* Martin Morgan; Bioc-devel@r-project.org > *件名:* Re: [Bioc-devel] About Adding SSH Keys to GitHub Account > Hi, Martin > > > Thanks for quick reply. > > Ok, I'll wait for the review. > > > Thanks, > > > Koki > > > > �: Martin Morgan > : 2018Ҵ6��28�� 19:59 > ���: ; Bioc-devel@r-project.org > ��٣: Re: [Bioc-devel] About Adding SSH Keys to GitHub Account > > Hi Koki -- > > The 'moderation' step requires a human to actually look at your > repository. Usually it is quick, but sometimes it can take up to a day. > Your package has been moderated and a reviewer assigned to it; further > instructions (basically, wait for up to two weeks while the reviewer > looks at your package in more detail) are in the comment posted to the > issue. > > Martin > > On 06/27/2018 10:38 PM, wrote: >> Hi, All >> >> >> I'm trying to submit my R/Bioconductor package by Bioconductor/Contributions >> >> https://github.com/Bioconductor/Contributions/issues/787 > <https://github.com/Bioconductor/Contributions/issues/787> > > LRBaseDbi · Issue #787 · Bioconductor/Contributions > <https://github.com/Bioconductor/Contributions/issues/787> > github.com > Update the following URL to point to the GitHub repository of the > package you wish to submit to Bioconductor Repository: > https://github.com/rikenbit/LRBaseDbi Confirm the following by editing > each ... > > >
