Re: [Bioc-devel] Accessing updated package through Devel and priming package for next release

2021-03-02 Thread Martin Morgan
Have you pushed your changes to git.bioconductor.org? I see

HPAStainR master$ git remote -v
origin  g...@git.bioconductor.org:packages/HPAStainR (fetch)
origin  g...@git.bioconductor.org:packages/HPAStainR (push)
HPAStainR master$ git pull
Already up to date.
HPAStainR master$ grep Version DESCRIPTION
Version: 1.1.3



On 3/2/21, 4:50 PM, "Bioc-devel on behalf of Tim Nieuwenhuis" 
 wrote:

Hello,

I am the maintainer of the package HPAStainR. We are about to respond to 
reviewer comments on the package's associated paper, and I am trying to have an 
updated accessible version of the package for the reviewers to use. I currently 
have the updated version of the package as version 1.1.4 on the master branch, 
however when I try to download the developer version of my package with

install.packages("BiocManager")
BiocManager::install(version='devel')
BiocManager::install("HPAStainR")

I end up downloading the previous devel version of HPAStainR which is 
version 1.1.3. I am unsure if I did something wrong in either my versioning, 
git pushes, or in my downloading of the developer version. I know I can just 
have the reviewers acquire the package through github, but I also want to make 
sure that these changes are primed to be entered into the next Bioconductor 
release. Any assistance would be greatly appreciated, and pardon my naivet� on 
the subject.

Github repository:
https://github.com/tnieuwe/HPAStainR

Many thanks,

Tim Nieuwenhuis
4th Year Graduate Student
Human Genetics
Halushka Laboratory
Johns Hopkins University SOM


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[Bioc-devel] Accessing updated package through Devel and priming package for next release

2021-03-02 Thread Tim Nieuwenhuis
Hello,

I am the maintainer of the package HPAStainR. We are about to respond to 
reviewer comments on the package's associated paper, and I am trying to have an 
updated accessible version of the package for the reviewers to use. I currently 
have the updated version of the package as version 1.1.4 on the master branch, 
however when I try to download the developer version of my package with

install.packages("BiocManager")
BiocManager::install(version='devel')
BiocManager::install("HPAStainR")

I end up downloading the previous devel version of HPAStainR which is version 
1.1.3. I am unsure if I did something wrong in either my versioning, git 
pushes, or in my downloading of the developer version. I know I can just have 
the reviewers acquire the package through github, but I also want to make sure 
that these changes are primed to be entered into the next Bioconductor release. 
Any assistance would be greatly appreciated, and pardon my naivet� on the 
subject.

Github repository:
https://github.com/tnieuwe/HPAStainR

Many thanks,

Tim Nieuwenhuis
4th Year Graduate Student
Human Genetics
Halushka Laboratory
Johns Hopkins University SOM


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