Re: [Bioc-devel] AnnotationHub: Error in Docker release_core

2015-04-09 Thread Elena Grassi
Hi,
On Thu, Apr 9, 2015 at 10:27 AM, Ludwig Geistlinger
ludwig.geistlin...@bio.ifi.lmu.de wrote:


 Error in file(con, r) : cannot open the connection
 In addition: Warning message:
 In file(con, r) : unable to resolve 'annotationhub.bioconductor.org'

That's strange, on linux it's working. Seems related to network
unavailability inside Docker with Mac OS X (I know, not a very
insightful suggestion...).

 BTW: are the docker scripts that were used to create the bioc dockers under

 http://www.bioconductor.org/help/docker/

 somewhere available?

https://github.com/Bioconductor/bioc_docker

E.

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Re: [Bioc-devel] AnnotationHub: Error in Docker release_core

2015-04-09 Thread Ludwig Geistlinger
Dear Elena,

thank you for your quick response.
Seems as I have make this up to early - it works now for me as well, must
have been a pure connection issue.

Thx for pointing me to the docker scripts (I must have overread it, is ac
tually also stated under http://bioconductor.org/help/docker/).

Sorry for the inconvenience!!

Best,
Ludiwg


 Hi,
 On Thu, Apr 9, 2015 at 10:27 AM, Ludwig Geistlinger
 ludwig.geistlin...@bio.ifi.lmu.de wrote:


 Error in file(con, r) : cannot open the connection
 In addition: Warning message:
 In file(con, r) : unable to resolve 'annotationhub.bioconductor.org'

 That's strange, on linux it's working. Seems related to network
 unavailability inside Docker with Mac OS X (I know, not a very
 insightful suggestion...).

 BTW: are the docker scripts that were used to create the bioc dockers
 under

 http://www.bioconductor.org/help/docker/

 somewhere available?

 https://github.com/Bioconductor/bioc_docker

 E.



-- 
Dipl.-Bioinf. Ludwig Geistlinger

Lehr- und Forschungseinheit für Bioinformatik
Institut für Informatik
Ludwig-Maximilians-Universität München
Amalienstrasse 17, 2. Stock, Büro A201
80333 München

Tel.: 089-2180-4067
eMail: ludwig.geistlin...@bio.ifi.lmu.de

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