Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Turaga, Nitesh]

Hi Pijush

You also might want to check the RSS feeds 
http://bioconductor.org/developers/gitlog/ to see if your package has been 
updated.

Best,

Nitesh 



> On Jun 14, 2018, at 3:43 AM, Pijush Das  wrote:
> 
> Dear Shepherd, Lori ,
> 
> 
> The DESCRIPTION file is already edited before in github repository but that
> time I unable to make the
> same changes in Bioconductor repository.
> 
> 
> After following your instruction what I have done is given below.
> 
> 
> The SSH key is already set in github and Bioconductor repository before. I
> hope it will helpful for other.
> May be some step are not necessary for such kind of changes, I do not know.
> It is just my experiment.
> 
> 
> Firstly what I have done that I have downloaded the all content from github
> repository by using the command below
> 
> $ git clone g...@github.com:pijush1285/sigFeature.git
> 
> After that I add the description file and commit by using the following
> command. This downloading and committing is not
> required for this case because I have done the changes in github repository
> previously manually. Though I have done it
> 
> $ git add DESCRIPTION
> $ git commit -m "commit DSCRIPTION"
> 
> After that I have puss the Description file in github repository. Some kind
> of warning is showing.
> 
> $ git push origin master
> Warning: Permanently added the RSA host key for IP address '192.30.253.112'
> to the list of known hosts.
> Everything up-to-date
> 
> 
> 
> After that I Configure the “remotes” of my local git repository by using
> the command given below.
> 
> $ git remote add upstream g...@git.bioconductor.org:packages/sigFeature.git
> 
> 
> After that I try to puss upstream master by using the command below.
> 
> $ git push upstream master
> The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be
> established.
> ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q.
> Are you sure you want to continue connecting (yes/no)? yes
> Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to
> the list of known hosts.
> Counting objects: 3, done.
> Delta compression using up to 2 threads.
> Compressing objects: 100% (3/3), done.
> Writing objects: 100% (3/3), 721 bytes | 721.00 KiB/s, done.
> Total 3 (delta 2), reused 1 (delta 0)
> To git.bioconductor.org:packages/sigFeature.git
>   727af94..8d24bbb  master -> master
> 
> 
> But the change is not showing in Bioconductor repository. Will it take time
> ?
> 
> 
> Please inform me if I have taken some wrong step in updating/editing  the
> DESCRIPTION
> file in Biocnductor repository.
> 
> 
> Thank you
> 
> regards
> Pijush
> 
> 
> 
> 
> 
> 
> On Tue, Jun 12, 2018 at 7:38 PM, Shepherd, Lori <
> lori.sheph...@roswellpark.org> wrote:
> 
>> Please continue to reply all so that the response thread remains on the
>> mailing list and that others may help as well.
>> 
>> 
>> 
>> Are you able to see the results of
>> 
>> 
>> ssh -T g...@git.bioconductor.org
>> 
>> 
>> 
>> 
>> Lori Shepherd
>> 
>> Bioconductor Core Team
>> 
>> Roswell Park Cancer Institute
>> 
>> Department of Biostatistics & Bioinformatics
>> 
>> Elm & Carlton Streets
>> 
>> Buffalo, New York 14263
>> --
>> *From:* Pijush Das 
>> *Sent:* Tuesday, June 12, 2018 8:50:04 AM
>> *To:* Shepherd, Lori
>> 
>> *Subject:* Re: [Bioc-devel] BioC 2018 poster / talk / scholarship /
>> workshop application deadline May 17
>> 
>> 
>> Dear  Shepherd, Lori
>> 
>> 
>> After running the script " git remote -v " the I have found the output
>> given below.
>> 
>> PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
>> $ git remote -v
>> origin  https://github.com/pijush1285/sigFeature (fetch)
>> origin  https://github.com/pijush1285/sigFeature (push)
>> upstreamg...@git.bioconductor.org:packages/sigFeature.git (fetch)
>> upstreamg...@git.bioconductor.org:packages/sigFeature.git (push)
>> 
>> 
>> 
>> After that I have tried to solve the problem and get a new fatal problem
>> given below.
>> 
>> PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
>> $ git push upstream master
>> ssh: connect to host git.bioconductor.org port 22: Connection timed out
>> fatal: Could not read from remote repository.
>> 
>> Please make sure you have the correct access

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Shepherd, Lori]

It can take up to 24 hours to appear on the landing page for the package. We do 
a daily build and depending on when you pushed changes to the package will 
determine if the change is picked up in todays build or tomorrows build.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Pijush Das 
Sent: Thursday, June 14, 2018 3:43:49 AM
To: Shepherd, Lori
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop 
application deadline May 17

Dear Shepherd, Lori ,


The DESCRIPTION file is already edited before in github repository but that 
time I unable to make the
same changes in Bioconductor repository.


After following your instruction what I have done is given below.


The SSH key is already set in github and Bioconductor repository before. I hope 
it will helpful for other.
May be some step are not necessary for such kind of changes, I do not know.
It is just my experiment.


Firstly what I have done that I have downloaded the all content from github 
repository by using the command below

$ git clone g...@github.com:pijush1285/sigFeature.git

After that I add the description file and commit by using the following 
command. This downloading and committing is not
required for this case because I have done the changes in github repository 
previously manually. Though I have done it

$ git add DESCRIPTION
$ git commit -m "commit DSCRIPTION"

After that I have puss the Description file in github repository. Some kind of 
warning is showing.

$ git push origin master
Warning: Permanently added the RSA host key for IP address '192.30.253.112' to 
the list of known hosts.
Everything up-to-date



After that I Configure the �remotes� of my local git repository by using the 
command given below.

$ git remote add upstream g...@git.bioconductor.org:packages/sigFeature.git


After that I try to puss upstream master by using the command below.

$ git push upstream master
The authenticity of host 'git.bioconductor.org<http://git.bioconductor.org> 
(34.192.48.227)' can't be established.
ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q.
Are you sure you want to continue connecting (yes/no)? yes
Warning: Permanently added 
'git.bioconductor.org<http://git.bioconductor.org>,34.192.48.227' (ECDSA) to 
the list of known hosts.
Counting objects: 3, done.
Delta compression using up to 2 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 721 bytes | 721.00 KiB/s, done.
Total 3 (delta 2), reused 1 (delta 0)
To git.bioconductor.org:packages/sigFeature.git
   727af94..8d24bbb  master -> master


But the change is not showing in Bioconductor repository. Will it take time ?


Please inform me if I have taken some wrong step in updating/editing  the 
DESCRIPTION
file in Biocnductor repository.


Thank you

regards
Pijush






On Tue, Jun 12, 2018 at 7:38 PM, Shepherd, Lori 
mailto:lori.sheph...@roswellpark.org>> wrote:

Please continue to reply all so that the response thread remains on the mailing 
list and that others may help as well.



Are you able to see the results of


ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>




Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Pijush Das mailto:topij...@gmail.com>>
Sent: Tuesday, June 12, 2018 8:50:04 AM
To: Shepherd, Lori

Subject: Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop 
application deadline May 17


Dear  Shepherd, Lori


After running the script " git remote -v " the I have found the output given 
below.

PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
$ git remote -v
origin  https://github.com/pijush1285/sigFeature (fetch)
origin  https://github.com/pijush1285/sigFeature (push)
upstreamg...@git.bioconductor.org:packages/sigFeature.git (fetch)
upstreamg...@git.bioconductor.org:packages/sigFeature.git (push)



After that I have tried to solve the problem and get a new fatal problem given 
below.

PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
$ git push upstream master
ssh: connect to host git.bioconductor.org<http://git.bioconductor.org> port 22: 
Connection timed out
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.



Please help to edit DESCRIPTION file present in Bioconductor repository.


Thank you

regards
Pijush




On Tue, Jun 12, 2018 at 5:09 PM, Shepherd, Lori 
mailto:lori.sheph...@roswellpark.org>> wrote:

What is the results of


git remote -v


Did you add an upstream remo

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Pijush Das]

 Dear Shepherd, Lori ,


The DESCRIPTION file is already edited before in github repository but that
time I unable to make the
same changes in Bioconductor repository.


After following your instruction what I have done is given below.


The SSH key is already set in github and Bioconductor repository before. I
hope it will helpful for other.
May be some step are not necessary for such kind of changes, I do not know.
It is just my experiment.


Firstly what I have done that I have downloaded the all content from github
repository by using the command below

$ git clone g...@github.com:pijush1285/sigFeature.git

After that I add the description file and commit by using the following
command. This downloading and committing is not
required for this case because I have done the changes in github repository
previously manually. Though I have done it

$ git add DESCRIPTION
$ git commit -m "commit DSCRIPTION"

After that I have puss the Description file in github repository. Some kind
of warning is showing.

$ git push origin master
Warning: Permanently added the RSA host key for IP address '192.30.253.112'
to the list of known hosts.
Everything up-to-date



After that I Configure the “remotes” of my local git repository by using
the command given below.

$ git remote add upstream g...@git.bioconductor.org:packages/sigFeature.git


After that I try to puss upstream master by using the command below.

$ git push upstream master
The authenticity of host 'git.bioconductor.org (34.192.48.227)' can't be
established.
ECDSA key fingerprint is SHA256:nXILc5fVCnDfOID8HgPi+mSufGtr2JMYgnRa1JAQj/Q.
Are you sure you want to continue connecting (yes/no)? yes
Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to
the list of known hosts.
Counting objects: 3, done.
Delta compression using up to 2 threads.
Compressing objects: 100% (3/3), done.
Writing objects: 100% (3/3), 721 bytes | 721.00 KiB/s, done.
Total 3 (delta 2), reused 1 (delta 0)
To git.bioconductor.org:packages/sigFeature.git
   727af94..8d24bbb  master -> master


But the change is not showing in Bioconductor repository. Will it take time
?


Please inform me if I have taken some wrong step in updating/editing  the
DESCRIPTION
file in Biocnductor repository.


Thank you

regards
Pijush






On Tue, Jun 12, 2018 at 7:38 PM, Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:

> Please continue to reply all so that the response thread remains on the
> mailing list and that others may help as well.
>
>
>
> Are you able to see the results of
>
>
> ssh -T g...@git.bioconductor.org
>
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ----------
> *From:* Pijush Das 
> *Sent:* Tuesday, June 12, 2018 8:50:04 AM
> *To:* Shepherd, Lori
>
> *Subject:* Re: [Bioc-devel] BioC 2018 poster / talk / scholarship /
> workshop application deadline May 17
>
>
> Dear  Shepherd, Lori
>
>
> After running the script " git remote -v " the I have found the output
> given below.
>
> PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
> $ git remote -v
> origin  https://github.com/pijush1285/sigFeature (fetch)
> origin  https://github.com/pijush1285/sigFeature (push)
> upstreamg...@git.bioconductor.org:packages/sigFeature.git (fetch)
> upstreamg...@git.bioconductor.org:packages/sigFeature.git (push)
>
>
>
> After that I have tried to solve the problem and get a new fatal problem
> given below.
>
> PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
> $ git push upstream master
> ssh: connect to host git.bioconductor.org port 22: Connection timed out
> fatal: Could not read from remote repository.
>
> Please make sure you have the correct access rights
> and the repository exists.
>
>
>
> Please help to edit DESCRIPTION file present in Bioconductor repository.
>
>
> Thank you
>
> regards
> Pijush
>
>
>
>
> On Tue, Jun 12, 2018 at 5:09 PM, Shepherd, Lori <
> lori.sheph...@roswellpark.org> wrote:
>
> What is the results of
>
>
> git remote -v
>
>
> Did you add an upstream remote pointing to your package as described in
> the link Mike sent:
>
> https://bioconductor.org/developers/how-to/git/new-package-workflow/
>
>
>
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel  on behalf of Pijush

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Shepherd, Lori]

Please continue to reply all so that the response thread remains on the mailing 
list and that others may help as well.



Are you able to see the results of


ssh -T g...@git.bioconductor.org




Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Pijush Das 
Sent: Tuesday, June 12, 2018 8:50:04 AM
To: Shepherd, Lori
Subject: Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop 
application deadline May 17


Dear  Shepherd, Lori


After running the script " git remote -v " the I have found the output given 
below.

PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
$ git remote -v
origin  https://github.com/pijush1285/sigFeature (fetch)
origin  https://github.com/pijush1285/sigFeature (push)
upstreamg...@git.bioconductor.org:packages/sigFeature.git (fetch)
upstreamg...@git.bioconductor.org:packages/sigFeature.git (push)



After that I have tried to solve the problem and get a new fatal problem given 
below.

PC MINGW64 ~/Desktop/BioconductorEdit/New folder/sigFeature (master)
$ git push upstream master
ssh: connect to host git.bioconductor.org<http://git.bioconductor.org> port 22: 
Connection timed out
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.



Please help to edit DESCRIPTION file present in Bioconductor repository.


Thank you

regards
Pijush




On Tue, Jun 12, 2018 at 5:09 PM, Shepherd, Lori 
mailto:lori.sheph...@roswellpark.org>> wrote:

What is the results of


git remote -v


Did you add an upstream remote pointing to your package as described in the 
link Mike sent:

https://bioconductor.org/developers/how-to/git/new-package-workflow/






Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel 
mailto:bioc-devel-boun...@r-project.org>> on 
behalf of Pijush Das mailto:topij...@gmail.com>>
Sent: Tuesday, June 12, 2018 3:48:04 AM
To: Mike Smith
Cc: bioc-devel
Subject: Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop 
application deadline May 17

Hello Mike,



There is a little mistake in the DESCRIPTION file in my package named
"sigFeature".
In the Description portion inside the DESCRIPTION file, there are
words " Bayesian
T statistic",
it is wrongly placed there. This should be only "t- statistic".

You have given an instruction a month before. According to that instruction
I am trying to solve the problem.
But I have faced another issue which I do not understand.
Please help me to solve that. The Problem is given below.

PC MINGW64 ~/Desktop/BioconductorEdit/sigFeature (master)
$ git push upstream master
fatal: 'upstream' does not appear to be a git repository
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.



Thank you



regards
Pijush





On Fri, May 11, 2018 at 12:12 PM, Mike Smith 
mailto:grimbo...@gmail.com>> wrote:

> Dear Pijush,
>
> Once a package has been accepted to Bioconductor, a copy is made in
> Bioconductor's own git repository and this is the source from which the
> packages are made available to users.  Any change you make in Github won't
> be automatically reflected there, you have to explicitly make the change in
> git.bioconductor.org<http://git.bioconductor.org>.
>
> It sounds like you should take a look at https://bioconductor.org/
> developers/how-to/git/new-package-workflow/ to make sure you have access
> to the Bioconductor repository (maybe you've already done this if you've
> added an SSH key) and then https://bioconductor.org/
> developers/how-to/git/push-to-github-bioc/ which describes how to make
> sure you commit changes both to your Github repository and the version at
> Bioconductor.
>
> Regards,
>
> Mike
>
> On 11 May 2018 at 05:48, Pijush Das 
> mailto:topij...@gmail.com>> wrote:
>
>> Dear Martin Morgan,
>>
>>
>> I have successfully added the SSH key in github account and Bioconductor.
>> After rechecking the package in Bioconductor I have found that there is a
>> mistake
>> in the DESCRIPTION file.
>> In the Description portion inside the DESCRIPTION file, there are
>> words " Bayesian
>> T statistic",
>> it is wrongly placed there. This should be only "t- statistic".
>> I have change it in the github with a version bump.
>>
>> Is that change can be seen in Bioconductor automatically?
>> Or I have to do anything

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Shepherd, Lori]

What is the results of


git remote -v


Did you add an upstream remote pointing to your package as described in the 
link Mike sent:

https://bioconductor.org/developers/how-to/git/new-package-workflow/






Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Pijush Das 

Sent: Tuesday, June 12, 2018 3:48:04 AM
To: Mike Smith
Cc: bioc-devel
Subject: Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop 
application deadline May 17

Hello Mike,



There is a little mistake in the DESCRIPTION file in my package named
"sigFeature".
In the Description portion inside the DESCRIPTION file, there are
words " Bayesian
T statistic",
it is wrongly placed there. This should be only "t- statistic".

You have given an instruction a month before. According to that instruction
I am trying to solve the problem.
But I have faced another issue which I do not understand.
Please help me to solve that. The Problem is given below.

PC MINGW64 ~/Desktop/BioconductorEdit/sigFeature (master)
$ git push upstream master
fatal: 'upstream' does not appear to be a git repository
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.



Thank you



regards
Pijush





On Fri, May 11, 2018 at 12:12 PM, Mike Smith  wrote:

> Dear Pijush,
>
> Once a package has been accepted to Bioconductor, a copy is made in
> Bioconductor's own git repository and this is the source from which the
> packages are made available to users.  Any change you make in Github won't
> be automatically reflected there, you have to explicitly make the change in
> git.bioconductor.org.
>
> It sounds like you should take a look at https://bioconductor.org/
> developers/how-to/git/new-package-workflow/ to make sure you have access
> to the Bioconductor repository (maybe you've already done this if you've
> added an SSH key) and then https://bioconductor.org/
> developers/how-to/git/push-to-github-bioc/ which describes how to make
> sure you commit changes both to your Github repository and the version at
> Bioconductor.
>
> Regards,
>
> Mike
>
> On 11 May 2018 at 05:48, Pijush Das  wrote:
>
>> Dear Martin Morgan,
>>
>>
>> I have successfully added the SSH key in github account and Bioconductor.
>> After rechecking the package in Bioconductor I have found that there is a
>> mistake
>> in the DESCRIPTION file.
>> In the Description portion inside the DESCRIPTION file, there are
>> words " Bayesian
>> T statistic",
>> it is wrongly placed there. This should be only "t- statistic".
>> I have change it in the github with a version bump.
>>
>> Is that change can be seen in Bioconductor automatically?
>> Or I have to do anything else? Please let me know.
>>
>> Thank you
>>
>>
>> regards
>> Pijush
>>
>>
>>
>>
>>
>>
>>
>>
>> On Wed, May 9, 2018 at 7:15 PM, Martin Morgan <
>> martin.mor...@roswellpark.org
>> > wrote:
>>
>> > The scholarships support up to $500 travel. The scholarship also covers
>> > accommodation and registration.
>> >
>> > A letter inviting you to the conference will be sent separately.
>> >
>> > Martin
>> >
>> > On 05/09/2018 01:13 AM, Pijush Das wrote:
>> >
>> >> Dear Martin Morgan,
>> >>
>> >>
>> >> Thank you Morgan for informing me to join your annual conference BioC
>> >> 2018.
>> >> I am very much interested to attend the BioC 2018 conference.
>> >> Presently I am perusing my PhD from CSIR-Indian Institute of Chemical
>> >> biology.
>> >> So it is not possible to collect all the money to pay all the expenses
>> >> myself.
>> >>
>> >>
>> >> I would like to know if I am selected for the scholarship, they will
>> pay
>> >> for costs such as
>> >> travel, accommodation, and registration ? Or they will pay only $500
>> per
>> >> person?
>> >>
>> >>
>> >> If it is possible please send me an invitation letter for the annual
>> >> conference BioC 2018.
>> >> The invitation letter will help me for grant application to the indian
>> >> funding body such as DBT or CSIR etc.
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> Thank you
>> >&g

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Pijush Das]

Hello Mike,



There is a little mistake in the DESCRIPTION file in my package named
"sigFeature".
In the Description portion inside the DESCRIPTION file, there are
words " Bayesian
T statistic",
it is wrongly placed there. This should be only "t- statistic".

You have given an instruction a month before. According to that instruction
I am trying to solve the problem.
But I have faced another issue which I do not understand.
Please help me to solve that. The Problem is given below.

PC MINGW64 ~/Desktop/BioconductorEdit/sigFeature (master)
$ git push upstream master
fatal: 'upstream' does not appear to be a git repository
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.



Thank you



regards
Pijush





On Fri, May 11, 2018 at 12:12 PM, Mike Smith  wrote:

> Dear Pijush,
>
> Once a package has been accepted to Bioconductor, a copy is made in
> Bioconductor's own git repository and this is the source from which the
> packages are made available to users.  Any change you make in Github won't
> be automatically reflected there, you have to explicitly make the change in
> git.bioconductor.org.
>
> It sounds like you should take a look at https://bioconductor.org/
> developers/how-to/git/new-package-workflow/ to make sure you have access
> to the Bioconductor repository (maybe you've already done this if you've
> added an SSH key) and then https://bioconductor.org/
> developers/how-to/git/push-to-github-bioc/ which describes how to make
> sure you commit changes both to your Github repository and the version at
> Bioconductor.
>
> Regards,
>
> Mike
>
> On 11 May 2018 at 05:48, Pijush Das  wrote:
>
>> Dear Martin Morgan,
>>
>>
>> I have successfully added the SSH key in github account and Bioconductor.
>> After rechecking the package in Bioconductor I have found that there is a
>> mistake
>> in the DESCRIPTION file.
>> In the Description portion inside the DESCRIPTION file, there are
>> words " Bayesian
>> T statistic",
>> it is wrongly placed there. This should be only "t- statistic".
>> I have change it in the github with a version bump.
>>
>> Is that change can be seen in Bioconductor automatically?
>> Or I have to do anything else? Please let me know.
>>
>> Thank you
>>
>>
>> regards
>> Pijush
>>
>>
>>
>>
>>
>>
>>
>>
>> On Wed, May 9, 2018 at 7:15 PM, Martin Morgan <
>> martin.mor...@roswellpark.org
>> > wrote:
>>
>> > The scholarships support up to $500 travel. The scholarship also covers
>> > accommodation and registration.
>> >
>> > A letter inviting you to the conference will be sent separately.
>> >
>> > Martin
>> >
>> > On 05/09/2018 01:13 AM, Pijush Das wrote:
>> >
>> >> Dear Martin Morgan,
>> >>
>> >>
>> >> Thank you Morgan for informing me to join your annual conference BioC
>> >> 2018.
>> >> I am very much interested to attend the BioC 2018 conference.
>> >> Presently I am perusing my PhD from CSIR-Indian Institute of Chemical
>> >> biology.
>> >> So it is not possible to collect all the money to pay all the expenses
>> >> myself.
>> >>
>> >>
>> >> I would like to know if I am selected for the scholarship, they will
>> pay
>> >> for costs such as
>> >> travel, accommodation, and registration ? Or they will pay only $500
>> per
>> >> person?
>> >>
>> >>
>> >> If it is possible please send me an invitation letter for the annual
>> >> conference BioC 2018.
>> >> The invitation letter will help me for grant application to the indian
>> >> funding body such as DBT or CSIR etc.
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> Thank you
>> >>
>> >>
>> >>
>> >> regards
>> >> Pijush
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >>
>> >> On Mon, May 7, 2018 at 2:59 AM, Martin Morgan <
>> >> martin.mor...@roswellpark.org >
>> >> wrote:
>> >>
>> >> Join us for our annual conference BioC 2018: Where Software and
>> >> Biology Connect, at Victoria University on the University of
>> Toronto
>> >> campus
>> >>
>> >> http://bioc2018.bioconductor.org > >
>> >>
>> >> The deadline for poster, talk, scholarship (travel, accommodation,
>> >> and registration), and workshop applications is May 17, see
>> >>
>> >> http://bioc2018.bioconductor.org/call-for-abstracts
>> >> 
>> >> http://bioc2018.bioconductor.org/scholarships
>> >> 
>> >>
>> >> Martin Morgan
>> >> Bioconductor
>> >>
>> >>
>> >> This email message may contain legally privileged
>> >> and/or...{{dropped:2}}
>> >>
>> >> ___
>> >> Bioc-devel@r-project.org  mailing
>> >> list
>> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> >> 
>> >>
>> >>
>> >>
>> >
>> > This email message may contain legally privil

Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Mike Smith]

Dear Pijush,

Once a package has been accepted to Bioconductor, a copy is made in
Bioconductor's own git repository and this is the source from which the
packages are made available to users.  Any change you make in Github won't
be automatically reflected there, you have to explicitly make the change in
git.bioconductor.org.

It sounds like you should take a look at
https://bioconductor.org/developers/how-to/git/new-package-workflow/ to
make sure you have access to the Bioconductor repository (maybe you've
already done this if you've added an SSH key) and then
https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ which
describes how to make sure you commit changes both to your Github
repository and the version at Bioconductor.

Regards,

Mike

On 11 May 2018 at 05:48, Pijush Das  wrote:

> Dear Martin Morgan,
>
>
> I have successfully added the SSH key in github account and Bioconductor.
> After rechecking the package in Bioconductor I have found that there is a
> mistake
> in the DESCRIPTION file.
> In the Description portion inside the DESCRIPTION file, there are
> words " Bayesian
> T statistic",
> it is wrongly placed there. This should be only "t- statistic".
> I have change it in the github with a version bump.
>
> Is that change can be seen in Bioconductor automatically?
> Or I have to do anything else? Please let me know.
>
> Thank you
>
>
> regards
> Pijush
>
>
>
>
>
>
>
>
> On Wed, May 9, 2018 at 7:15 PM, Martin Morgan <
> martin.mor...@roswellpark.org
> > wrote:
>
> > The scholarships support up to $500 travel. The scholarship also covers
> > accommodation and registration.
> >
> > A letter inviting you to the conference will be sent separately.
> >
> > Martin
> >
> > On 05/09/2018 01:13 AM, Pijush Das wrote:
> >
> >> Dear Martin Morgan,
> >>
> >>
> >> Thank you Morgan for informing me to join your annual conference BioC
> >> 2018.
> >> I am very much interested to attend the BioC 2018 conference.
> >> Presently I am perusing my PhD from CSIR-Indian Institute of Chemical
> >> biology.
> >> So it is not possible to collect all the money to pay all the expenses
> >> myself.
> >>
> >>
> >> I would like to know if I am selected for the scholarship, they will pay
> >> for costs such as
> >> travel, accommodation, and registration ? Or they will pay only $500 per
> >> person?
> >>
> >>
> >> If it is possible please send me an invitation letter for the annual
> >> conference BioC 2018.
> >> The invitation letter will help me for grant application to the indian
> >> funding body such as DBT or CSIR etc.
> >>
> >>
> >>
> >>
> >>
> >> Thank you
> >>
> >>
> >>
> >> regards
> >> Pijush
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> On Mon, May 7, 2018 at 2:59 AM, Martin Morgan <
> >> martin.mor...@roswellpark.org >
> >> wrote:
> >>
> >> Join us for our annual conference BioC 2018: Where Software and
> >> Biology Connect, at Victoria University on the University of Toronto
> >> campus
> >>
> >> http://bioc2018.bioconductor.org 
> >>
> >> The deadline for poster, talk, scholarship (travel, accommodation,
> >> and registration), and workshop applications is May 17, see
> >>
> >> http://bioc2018.bioconductor.org/call-for-abstracts
> >> 
> >> http://bioc2018.bioconductor.org/scholarships
> >> 
> >>
> >> Martin Morgan
> >> Bioconductor
> >>
> >>
> >> This email message may contain legally privileged
> >> and/or...{{dropped:2}}
> >>
> >> ___
> >> Bioc-devel@r-project.org  mailing
> >> list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >> 
> >>
> >>
> >>
> >
> > This email message may contain legally privileged and/or confidential
> > information.  If you are not the intended recipient(s), or the employee
> or
> > agent responsible for the delivery of this message to the intended
> > recipient(s), you are hereby notified that any disclosure, copying,
> > distribution, or use of this email message is prohibited.  If you have
> > received this message in error, please notify the sender immediately by
> > e-mail and delete this email message from your computer. Thank you.
> >
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Pijush Das]

Dear Martin Morgan,


I have successfully added the SSH key in github account and Bioconductor.
After rechecking the package in Bioconductor I have found that there is a
mistake
in the DESCRIPTION file.
In the Description portion inside the DESCRIPTION file, there are
words " Bayesian
T statistic",
it is wrongly placed there. This should be only "t- statistic".
I have change it in the github with a version bump.

Is that change can be seen in Bioconductor automatically?
Or I have to do anything else? Please let me know.

Thank you


regards
Pijush








On Wed, May 9, 2018 at 7:15 PM, Martin Morgan  wrote:

> The scholarships support up to $500 travel. The scholarship also covers
> accommodation and registration.
>
> A letter inviting you to the conference will be sent separately.
>
> Martin
>
> On 05/09/2018 01:13 AM, Pijush Das wrote:
>
>> Dear Martin Morgan,
>>
>>
>> Thank you Morgan for informing me to join your annual conference BioC
>> 2018.
>> I am very much interested to attend the BioC 2018 conference.
>> Presently I am perusing my PhD from CSIR-Indian Institute of Chemical
>> biology.
>> So it is not possible to collect all the money to pay all the expenses
>> myself.
>>
>>
>> I would like to know if I am selected for the scholarship, they will pay
>> for costs such as
>> travel, accommodation, and registration ? Or they will pay only $500 per
>> person?
>>
>>
>> If it is possible please send me an invitation letter for the annual
>> conference BioC 2018.
>> The invitation letter will help me for grant application to the indian
>> funding body such as DBT or CSIR etc.
>>
>>
>>
>>
>>
>> Thank you
>>
>>
>>
>> regards
>> Pijush
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> On Mon, May 7, 2018 at 2:59 AM, Martin Morgan <
>> martin.mor...@roswellpark.org >
>> wrote:
>>
>> Join us for our annual conference BioC 2018: Where Software and
>> Biology Connect, at Victoria University on the University of Toronto
>> campus
>>
>> http://bioc2018.bioconductor.org 
>>
>> The deadline for poster, talk, scholarship (travel, accommodation,
>> and registration), and workshop applications is May 17, see
>>
>> http://bioc2018.bioconductor.org/call-for-abstracts
>> 
>> http://bioc2018.bioconductor.org/scholarships
>> 
>>
>> Martin Morgan
>> Bioconductor
>>
>>
>> This email message may contain legally privileged
>> and/or...{{dropped:2}}
>>
>> ___
>> Bioc-devel@r-project.org  mailing
>> list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
>>
>>
>>
>
> This email message may contain legally privileged and/or confidential
> information.  If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited.  If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
>

[[alternative HTML version deleted]]

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Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Martin Morgan]

The scholarships support up to $500 travel. The scholarship also covers 
accommodation and registration.


A letter inviting you to the conference will be sent separately.

Martin

On 05/09/2018 01:13 AM, Pijush Das wrote:

Dear Martin Morgan,


Thank you Morgan for informing me to join your annual conference BioC 2018.
I am very much interested to attend the BioC 2018 conference.
Presently I am perusing my PhD from CSIR-Indian Institute of Chemical 
biology.
So it is not possible to collect all the money to pay all the expenses 
myself.



I would like to know if I am selected for the scholarship, they will pay 
for costs such as
travel, accommodation, and registration ? Or they will pay only $500 per 
person?



If it is possible please send me an invitation letter for the annual 
conference BioC 2018.
The invitation letter will help me for grant application to the indian 
funding body such as DBT or CSIR etc.






Thank you



regards
Pijush













On Mon, May 7, 2018 at 2:59 AM, Martin Morgan 
mailto:martin.mor...@roswellpark.org>> 
wrote:


Join us for our annual conference BioC 2018: Where Software and
Biology Connect, at Victoria University on the University of Toronto
campus

http://bioc2018.bioconductor.org 

The deadline for poster, talk, scholarship (travel, accommodation,
and registration), and workshop applications is May 17, see

http://bioc2018.bioconductor.org/call-for-abstracts

http://bioc2018.bioconductor.org/scholarships


Martin Morgan
Bioconductor


This email message may contain legally privileged and/or...{{dropped:2}}

___
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This email message may contain legally privileged and/or...{{dropped:2}}

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Re: [Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Pijush Das]

Dear  Martin Morgan,


Thank you Morgan for informing me to join your annual conference BioC 2018.
I am very much interested to attend the BioC 2018 conference .
Presently I am perusing my PhD from CSIR-Indian Institute of Chemical
biology.
So it is not possible to collect all the money to pay all the expenses
myself.


I would like to know if I am selected for the scholarship, they will
pay for costs
such as
travel, accommodation, and registration ? Or they will pay only  $500 per
person?


If it is possible please send me an invitation letter for the  annual
conference BioC 2018.
The invitation letter will help me for grant application to the indian
funding body such as DBT or CSIR etc.





Thank you



regards
Pijush













On Mon, May 7, 2018 at 2:59 AM, Martin Morgan  wrote:

> Join us for our annual conference BioC 2018: Where Software and Biology
> Connect, at Victoria University on the University of Toronto campus
>
>   http://bioc2018.bioconductor.org
>
> The deadline for poster, talk, scholarship (travel, accommodation, and
> registration), and workshop applications is May 17, see
>
>   http://bioc2018.bioconductor.org/call-for-abstracts
>   http://bioc2018.bioconductor.org/scholarships
>
> Martin Morgan
> Bioconductor
>
>
> This email message may contain legally privileged and/or...{{dropped:2}}
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

[[alternative HTML version deleted]]

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[Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

[Martin Morgan]

Join us for our annual conference BioC 2018: Where Software and Biology 
Connect, at Victoria University on the University of Toronto campus


  http://bioc2018.bioconductor.org

The deadline for poster, talk, scholarship (travel, accommodation, and 
registration), and workshop applications is May 17, see


  http://bioc2018.bioconductor.org/call-for-abstracts
  http://bioc2018.bioconductor.org/scholarships

Martin Morgan
Bioconductor


This email message may contain legally privileged and/or...{{dropped:2}}

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