Re: [Bioc-devel] Bioconductor 3.17 requires R 4.3?

2023-02-24 Thread Kern, Lori 
We apologize for the confusion. I have made the necessary adjustments and it 
should be corrected on the webpage within the next hour or so.




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Bioc-devel  on behalf of Y-h. Taguchi 

Sent: Friday, February 24, 2023 5:55 AM
To: bioc-devel@r-project.org 
Subject: Re: [Bioc-devel] Bioconductor 3.17 requires R 4.3?

Hi people,

I have found that

https://secure-web.cisco.com/1ZHUJCk7UFe1Km5b_MT6LHyh87g0Fxm6ueXL9vOZb69BHSCRzTMX8K7qtpmZjcBa97JMn3u1uCmvDZ01U_gpDR0LHOGkiQp2pqhzxD1SA_go9ChJbbzHbBVZEbS8GpH8ZpHiznmBEbekoM5EKErjrtPWZvNuthq6_6vpGDXocpVrAKmocOQ4b-2LVM1OmdzibFMaAKXEbJ_ORrgRXFKQarqMKsjaxSWZhvRtXzbFZvKEpL5Gv7yEtI96cdrRPpOOb6Pi30aKPdQekpa2-YZk5L_x7CXawNTQdKLBiUqDsFg6GDFKBtjIWYxvt7mqgr-dZ/https%3A%2F%2Fcran.r-project.org%2Fsrc%2Fbase-prerelease%2FR-devel.tar.gz

can be used as R 4.3. But the statement

"The development version of *Bioconductor* is version *3.17*; it works with
*R* version 4.2.0."

in

Bioconductor - Install 
<https://secure-web.cisco.com/1CSQr0qXb4kDOJUm9q5j6utaCv-cgu66rj7kd2r3XWn7hkRgPy0u5SFD8N_L144QBCm6MTP0iUZ8rPY9RLbJrwfm8hSlCp-nk9kTksaVb_sDAPJakSx-TWwnOB27-6SJ7C5Itml5gmi6Qat9Ip2V5hCWDeSHqPBXqau467c7Aq5dJWDmFReNcPtp94NvCM1km3hO5qar0fmmRaxyz1msLT2_F5vL14GbBuKRc2nvBjaW9Xsl1uwaJxBT7YErlxOXxYC2ZoCGn3tBKVOoaaKSb0YeNWpTwexxfJOVGNU6tZFwab6h0isFwPWeeFakOnFeR/https%3A%2F%2Fbioconductor.org%2Finstall%2F>

is better to be fixed. It is a lie.

Yours, tag.


2023$BG/(B2$B7n(B24$BF|(B($B6b(B) 18:56 Y-h. Taguchi 
:

> Hi, people,
>
> I have released TDbasedUFE
>
> https://secure-web.cisco.com/1iZcj90y0Pa8E23DuiUww5G-2UBPHaDbDJbbDVy5qPk_zqZsYbQ1WQqISyc1hF8jtgGLEFFzyoadaUk73JoqCwQoU_t3ujNQo76pP1hP-WgL0MsFbIJka1CqyotgJwkJLnZzh9voJDTLBlBsxpKkwVFtj-fzj7VwyuXG12SMMtPjTtxQOg1Q9CNR46P9ZbEgpOdA_tnef1s7AP76qrMCS7w3pfvR1S_Vu-Vbnrfb5-w5fEUJcjPvmVCHjHIFBOPwXXtZePB5f2CbWWOJyI0HjtVJNTH-gsD8xCb2xiMJX5Hn0l6iH2ebCU8HLDnMUeyzj/https%3A%2F%2Fdoi.org%2Fdoi%3A10.18129%2FB9.bioc.TDbasedUFE
>
> for Bioc 3.17.
>
> In order to install this package, it says
>
> To install this package, start R (version "4.3") and enter:
>
> but the latest R is 4.2.2 and in
>
> Bioconductor - Install 
> <https://secure-web.cisco.com/1CSQr0qXb4kDOJUm9q5j6utaCv-cgu66rj7kd2r3XWn7hkRgPy0u5SFD8N_L144QBCm6MTP0iUZ8rPY9RLbJrwfm8hSlCp-nk9kTksaVb_sDAPJakSx-TWwnOB27-6SJ7C5Itml5gmi6Qat9Ip2V5hCWDeSHqPBXqau467c7Aq5dJWDmFReNcPtp94NvCM1km3hO5qar0fmmRaxyz1msLT2_F5vL14GbBuKRc2nvBjaW9Xsl1uwaJxBT7YErlxOXxYC2ZoCGn3tBKVOoaaKSb0YeNWpTwexxfJOVGNU6tZFwab6h0isFwPWeeFakOnFeR/https%3A%2F%2Fbioconductor.org%2Finstall%2F>
>
> "The development version of *Bioconductor* is version *3.17*; it works
> with *R* version 4.2.0."
>
> Bioc 3.17 works under R 4.2 or 4.3 ? The information is conflicting.
>
> If Bioc 3.17 requires  R 4.3, where is it?
>
> I am glad if you can help me on this issue.
>
> Yours, tag
>
> --
> Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
> 112-8551,Japan
> Tel./Fax.  +81-3-3817-1791/1792 
> https://secure-web.cisco.com/1VFWR91sytyQaeuVtJdJV60TY3thHVVE3P4MOcDXUwgymTm4U3F18ouNMIoEoDTNrKa_KxTFfe8mI5Ycmcira8aLzN05O5Kynj6x7OLubXQoz_8RfvPqTHijPx8iZgUnviUjlkNQ9Y-qRZgVc3hywK4JXiqHNF5Pf7Ua2irk0CfTUqZlEOUlZzUDLiJQLwhR8Urkaj2GC5vV0tODul2H4o9wSJ_G0nyLMHsIR8YrEKJvokiCDmx7pLgz1oK-hnvN1qcK0wQpct1BYLJXFE6sH7cFdbNs6B6bObEztqpsoV5FhVsnhMKIvGAfsv2SRNiu0/https%3A%2F%2Fresearchmap.jp%2FYh_Taguchi%2F
> $B")(B112-8551 $BCf1{Bg3XM}9)3XIt(B $BJ*M}3X2J(B $BED8}A190(B 
> $BEEOC(B/FAX 03-3817-1791/1792
>


--
Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
112-8551,Japan
Tel./Fax.  +81-3-3817-1791/1792 
https://secure-web.cisco.com/1VFWR91sytyQaeuVtJdJV60TY3thHVVE3P4MOcDXUwgymTm4U3F18ouNMIoEoDTNrKa_KxTFfe8mI5Ycmcira8aLzN05O5Kynj6x7OLubXQoz_8RfvPqTHijPx8iZgUnviUjlkNQ9Y-qRZgVc3hywK4JXiqHNF5Pf7Ua2irk0CfTUqZlEOUlZzUDLiJQLwhR8Urkaj2GC5vV0tODul2H4o9wSJ_G0nyLMHsIR8YrEKJvokiCDmx7pLgz1oK-hnvN1qcK0wQpct1BYLJXFE6sH7cFdbNs6B6bObEztqpsoV5FhVsnhMKIvGAfsv2SRNiu0/https%3A%2F%2Fresearchmap.jp%2FYh_Taguchi%2F
$B")(B112-8551 $BCf1{Bg3XM}9)3XIt(B $BJ*M}3X2J(B $BED8}A190(B 
$BEEOC(B/FAX 03-3817-1791/1792

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https://secure-web.cisco.com/1zd6Hmd5kF0MK4ihQII8Uyc91_TOAeKv1bvRE-n3m5ByzzANIebuerjXiPWpzz5QuwtRbCqiNPSRX9b_Hn4c4Wm7XX7i8GnKQlOVVMvPabKVxfvd0GS72puoBc7SJcCmtuYhltE2MTNB_Bi40ylD6R-B15GpG6SIrVKY8QU5wOwEuWonS4m_fAXVKuSiSIYnKSY-fv4gpNhmPLaxV1LGgUihbwino5bRnDms_uS1d6w2g3YnYM-WUZSF4ufpYNY9in_51IZKENOe8usvSEyQoCiQPK_b8OI1B2H5O1JtX9O4aPGzCJUCoSJ1N-KBCXpGb/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel



This email messa

Re: [Bioc-devel] Bioconductor 3.17 requires R 4.3?

2023-02-24 Thread Y-h. Taguchi 
Hi people,

I have found that

https://cran.r-project.org/src/base-prerelease/R-devel.tar.gz

can be used as R 4.3. But the statement

"The development version of *Bioconductor* is version *3.17*; it works with
*R* version 4.2.0."

in

Bioconductor - Install 

is better to be fixed. It is a lie.

Yours, tag.


2023年2月24日(金) 18:56 Y-h. Taguchi :

> Hi, people,
>
> I have released TDbasedUFE
>
> https://doi.org/doi:10.18129/B9.bioc.TDbasedUFE
>
> for Bioc 3.17.
>
> In order to install this package, it says
>
> To install this package, start R (version "4.3") and enter:
>
> but the latest R is 4.2.2 and in
>
> Bioconductor - Install 
>
> "The development version of *Bioconductor* is version *3.17*; it works
> with *R* version 4.2.0."
>
> Bioc 3.17 works under R 4.2 or 4.3 ? The information is conflicting.
>
> If Bioc 3.17 requires  R 4.3, where is it?
>
> I am glad if you can help me on this issue.
>
> Yours, tag
>
> --
> Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
> 112-8551,Japan
> Tel./Fax.  +81-3-3817-1791/1792 https://researchmap.jp/Yh_Taguchi/
> 〒112-8551 中央大学理工学部 物理学科 田口善弘 電話/FAX 03-3817-1791/1792
>


-- 
Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
112-8551,Japan
Tel./Fax.  +81-3-3817-1791/1792 https://researchmap.jp/Yh_Taguchi/
〒112-8551 中央大学理工学部 物理学科 田口善弘 電話/FAX 03-3817-1791/1792

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Re: [Bioc-devel] Bioconductor 3.17 requires R 4.3?

2023-02-24 Thread Lluís Revilla 
Dear Tag,

Congratulations for your successful submission of TDbasedUFE!

Your package was accepted and included in the devel branch of Bioconductor:
See this document about what to do now:
https://contributions.bioconductor.org/bioconductor-package-submissions.html#afteraccept
The devel version of Biocondutor will be 3.17 which will work with R 4.3
(The source code of R 4.3  is here: http://svn.r-project.org/R/trunk/) .
R 4.3 is in development. Once released, Bioconductor 3.17 will be released,
probably around April.
See this document about working with devel branch of Bioconductor and how
releases work:
https://contributions.bioconductor.org/use-devel.html?q=devel#which-version-of-r

The current release of Bioconductor is 3.16 which works with R-4.2.
You can see here all the information about past releases:
https://www.bioconductor.org/about/release-announcements/
Your package is not included in the 3.16 release because it was just
accepted.

I hope this helps.

Lluís




On Fri, 24 Feb 2023 at 10:56, Y-h. Taguchi  wrote:

> Hi, people,
>
> I have released TDbasedUFE
>
> https://doi.org/doi:10.18129/B9.bioc.TDbasedUFE
>
> for Bioc 3.17.
>
> In order to install this package, it says
>
> To install this package, start R (version "4.3") and enter:
>
> but the latest R is 4.2.2 and in
>
> Bioconductor - Install 
>
> "The development version of *Bioconductor* is version *3.17*; it works with
> *R* version 4.2.0."
>
> Bioc 3.17 works under R 4.2 or 4.3 ? The information is conflicting.
>
> If Bioc 3.17 requires  R 4.3, where is it?
>
> I am glad if you can help me on this issue.
>
> Yours, tag
>
> --
> Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
> 112-8551,Japan
> Tel./Fax.  +81-3-3817-1791/1792 https://researchmap.jp/Yh_Taguchi/
> 〒112-8551 中央大学理工学部 物理学科 田口善弘 電話/FAX 03-3817-1791/1792
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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[Bioc-devel] Bioconductor 3.17 requires R 4.3?

2023-02-24 Thread Y-h. Taguchi 
Hi, people,

I have released TDbasedUFE

https://doi.org/doi:10.18129/B9.bioc.TDbasedUFE

for Bioc 3.17.

In order to install this package, it says

To install this package, start R (version "4.3") and enter:

but the latest R is 4.2.2 and in

Bioconductor - Install 

"The development version of *Bioconductor* is version *3.17*; it works with
*R* version 4.2.0."

Bioc 3.17 works under R 4.2 or 4.3 ? The information is conflicting.

If Bioc 3.17 requires  R 4.3, where is it?

I am glad if you can help me on this issue.

Yours, tag

-- 
Y-h. Taguchi, Dept. Phys., Chuo Univ., Kasuga, Bunkyo-ku, Tokyo
112-8551,Japan
Tel./Fax.  +81-3-3817-1791/1792 https://researchmap.jp/Yh_Taguchi/
〒112-8551 中央大学理工学部 物理学科 田口善弘 電話/FAX 03-3817-1791/1792

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