Re: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
Hi Roel,
Thank you for working on the package.
The builds start at 5pm EST daily. If it's helpful, you can see which R
version, compilers and compiler flags are used for each build machine by
clicking the name at the top left of the report:
http://www.bioconductor.org/checkResults/devel/bioc-LATEST/
Valerie
On 04/20/2017 12:38 AM, Janssen-10, R.R.E. wrote:
> Dear Valerie,
>
> We're working on MutationalPatterns as you can see (we've had our last
> changes pushed into the SVN repository just two days ago).
> Due to the timezone differences between Europe and the US, we seem to be
> missing out the starting point of a new build round.
>
> So, at which time do you start a new build round? We have the fixes in place
> to address the build issues.
> There seems to be a difference between the R setup on your build machines and
> ours, which leads to differences in the tests. They all pass on our
> machines, so it's hard for us to debug this in a timely manner.
>
> Thanks!
>
> Kind regards,
> Roel Janssen
>
>
> From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Obenchain,
> Valerie [valerie.obench...@roswellpark.org]
> Sent: Wednesday, April 19, 2017 9:19 PM
> To: bioc-devel@r-project.org
> Subject: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
>
> Hi,
>
> Due to errors / unresponsive maintainers this new group of packages has
> been identified for potential deprecation in Biocondcutor 3.5.
>
> anamiR
> FunChiP
> MutationalPatterns
> seqplots
> snm
> ssviz
> stepwiseCM
> ToPASeq
>
> If anyone is interested in taking over as maintainer please let us know.
> If not fixed by Friday, April 21, these will be deprecated in 3.5.
>
> Valerie
>
>
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> --
>
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>
> Denk s.v.p aan het milieu voor u deze e-mail afdrukt.
>
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Re: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
Dear Valerie,
We're working on MutationalPatterns as you can see (we've had our last changes
pushed into the SVN repository just two days ago).
Due to the timezone differences between Europe and the US, we seem to be
missing out the starting point of a new build round.
So, at which time do you start a new build round? We have the fixes in place
to address the build issues.
There seems to be a difference between the R setup on your build machines and
ours, which leads to differences in the tests. They all pass on our machines,
so it's hard for us to debug this in a timely manner.
Thanks!
Kind regards,
Roel Janssen
From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Obenchain,
Valerie [valerie.obench...@roswellpark.org]
Sent: Wednesday, April 19, 2017 9:19 PM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
Hi,
Due to errors / unresponsive maintainers this new group of packages has
been identified for potential deprecation in Biocondcutor 3.5.
anamiR
FunChiP
MutationalPatterns
seqplots
snm
ssviz
stepwiseCM
ToPASeq
If anyone is interested in taking over as maintainer please let us know.
If not fixed by Friday, April 21, these will be deprecated in 3.5.
Valerie
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or
agent responsible for the delivery of this message to the intended
recipient(s), you are hereby notified that any disclosure, copying,
distribution, or use of this email message is prohibited. If you have received
this message in error, please notify the sender immediately by e-mail and
delete this email message from your computer. Thank you.
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
--
De informatie opgenomen in dit bericht kan vertrouwelijk zijn en is
uitsluitend bestemd voor de geadresseerde. Indien u dit bericht onterecht
ontvangt, wordt u verzocht de inhoud niet te gebruiken en de afzender direct
te informeren door het bericht te retourneren. Het Universitair Medisch
Centrum Utrecht is een publiekrechtelijke rechtspersoon in de zin van de W.H.W.
(Wet Hoger Onderwijs en Wetenschappelijk Onderzoek) en staat geregistreerd bij
de Kamer van Koophandel voor Midden-Nederland onder nr. 30244197.
Denk s.v.p aan het milieu voor u deze e-mail afdrukt.
--
This message may contain confidential information and is...{{dropped:11}}
___
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[Bioc-devel] Bioconductor 3.5 release: potential deprecations
Hi, Due to errors / unresponsive maintainers this new group of packages has been identified for potential deprecation in Biocondcutor 3.5. anamiR FunChiP MutationalPatterns seqplots snm ssviz stepwiseCM ToPASeq If anyone is interested in taking over as maintainer please let us know. If not fixed by Friday, April 21, these will be deprecated in 3.5. Valerie This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
