Re: [Bioc-devel] C++ compiler flags on Windows

2022-08-01 Thread Hervé Pagès 

On 01/08/2022 08:17, Martin Morgan wrote:

...

I notice that on the package landing page 
https://bioconductor.org/packages/3.16/bioc/html/syntenet.html there is no 
Windows binary, suggesting that it has never built successfully. It could be 
that the intermittent results you observed was actually due to something else, 
like the Windows builder not reporting for that day. The single package builder 
results have expired, so I’m not sure why those builds were successful; the 
builders and single package builder are not identical.


AFAIK the Single Package Builder no longer runs the Windows builds. So 
any Windows-related issue only gets detected once a contributed package 
is added to the daily builds.


H.


--
Hervé Pagès

Bioconductor Core Team
hpages.on.git...@gmail.com

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[Bioc-devel] C++ compiler flags on Windows

2022-08-01 Thread Fabricio de Almeida 
Dear Bioc developers,

I recently had a package accepted that passed the build system during review.

One week after acceptance, there were compilation problems on Windows. In the 
next build, the problems disappeared. Now, they're back again: 
http://bioconductor.org/checkResults/devel/bioc-LATEST/syntenet/palomino4-install.html

These compilations problems - and the fact that they appear and disappear 
without any intervention from me - seem to be related to changing C++ compiler 
flags in the Bioconductor build system for Windows.

Does anyone know if C++ compiler flags were changed recently on Windows in the 
Bioc build system? As I don't have a Makevars file in the /src directory of 
this package, does anyone know which flags I could include in a Makevars file 
to remove these Windows-specific warnings in compilation? I was wondering 
whether any of you had similar problems.

Kind regards,
Fabricio


=


Fabr�cio de Almeida Silva, MSc.

PhD student in Bioinformatics (Ghent University, Belgium)

UGent-VIB Center for Plant Systems Biology

Personal website: https://almeidasilvaf.github.io


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