[Bioc-devel] Fw: Bioconductor package SIM

2020-03-17 Thread r.menezes 
l.s.


I cannot seem to be able to activate my account on the bioconductor git. I get 
a message saying my email address (the same one on the package help file) is 
not associated with a maintainer of a Bioconductor package. The email address 
is write simply is


r.xavierdemene...@vumc.nl


as stated in the SIM package page.


I tried this on both firefox and chrome, and get the same error each time.


Is there anything I could be doing wrong?


Thanks in advance,

Renee



From: Shepherd, Lori 
Sent: 16 March 2020 15:47
To: Menezes, R. (Ren�e)
Cc: Ren�e Menezes
Subject: Re: Bioconductor package SIM

Please be aware your package is still failing.  This is very problematic.  The
next Bioconductor release is scheduled for Tuesday April 28th. We appreciate
your quick response in this matter. If your package remains broken we will begin
the deprecation process to remove the package from Bioconductor.



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Shepherd, Lori 
Sent: Thursday, February 27, 2020 12:08 PM
To: Menezes, R. (Ren�e) 
Cc: r.mene...@nki.nl 
Subject: Re: Bioconductor package SIM

Thank you! Please remember to update your email address in the DESCRIPTION of 
the package when you make changes too.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263


From: Menezes, R. (Ren�e) 
Sent: Thursday, February 27, 2020 12:07 PM
To: Shepherd, Lori 
Cc: r.mene...@nki.nl 
Subject: Re: Bioconductor package SIM

Dear Lori,

Thanks for your email. I saw the previous email but have not had the time to 
look at the problem. I have recently changed jobs (my new email address is in 
cc) and it has been really busy in the last few weeks.

I will look at the issue ASAP.

Kind regards,
Renee

Renee X. de Menezes
Lecturer, Dept. Epidemiology and Biostatistics, VUmc
r.mene...@vumc.nl
http://www.bigstatistics.nl/renee





Van: Shepherd, Lori 
Verzonden: donderdag 27 februari 2020 17:36
Aan: Menezes, R. (Ren�e) 
Onderwerp: Bioconductor package SIM

Dear Package Maintainer,

We would like to bring to your attention that your package is failing to 
build/check on our devel build machines:

http://bioconductor.org/checkResults/devel/bioc-LATEST/SIM

Would you mind taking a look at this? Don't hesitate to ask on the bioc-devel 
mailing list if you have any question or need help.

While the development branch is a place to develop new features and we expect 
packages to occasionally break,  they should not remain broken for an extended 
period of time.   If no action is taken over the next few weeks we will begin 
the deprecation process for your package.  The package has been failing since 
at least 01/24/20.  Thank you for your time and effort.

We notified you of your package failure in a group message entitled 
"Bioconductor Package Needs Update"  back on 01/27/20.

Please see https://stat.ethz.ch/pipermail/bioc-devel/2020-January/016081.html

Information can also be found on the troubleshooting build page of the website:
http://bioconductor.org/developers/how-to/troubleshoot-build-report/



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

This email message may contain legally privileged and/or confidential 
information. If you are not the intended recipient(s), or the employee or agent 
responsible for the delivery of this message to the intended recipient(s), you 
are hereby notified that any disclosure, copying, distribution, or use of this 
email message is prohibited. If you have received this message in error, please 
notify the sender immediately by e-mail and delete this email message from your 
computer. Thank you.
__
VUmc disclaimer : www.vumc.nl/disclaimer
AMC disclaimer : www.amc.nl/disclaimer

This email message may contain legally privileged and/or confidential 
information. If you are not the intended recipient(s), or the employee or agent 
responsible for the delivery of this message to the intended recipient(s), you 
are hereby notified that any disclosure, copying, distribution, or use of this 
email message is prohibited. If you have received this message in error, please 
notify the sender immediately by e-mail and delete this email message from your 
computer. Thank you.

This email message may contain legally privileged and/or confidential 
information. If you are not the intended recipient(s), or the employee or agent 
responsible for the delivery of thi

Re: [Bioc-devel] Fw: Bioconductor package SIM

2020-03-17 Thread Turaga, Nitesh 
The SIM package is registered to mboetze...@hotmail.com.

You can change the email on BiocCredentials app yourself.

Best,

Nitesh 

> On Mar 17, 2020, at 11:52 AM, r.mene...@nki.nl wrote:
> 
> l.s.
> 
> 
> I cannot seem to be able to activate my account on the bioconductor git. I 
> get a message saying my email address (the same one on the package help file) 
> is not associated with a maintainer of a Bioconductor package. The email 
> address is write simply is
> 
> 
> r.xavierdemene...@vumc.nl
> 
> 
> as stated in the SIM package page.
> 
> 
> I tried this on both firefox and chrome, and get the same error each time.
> 
> 
> Is there anything I could be doing wrong?
> 
> 
> Thanks in advance,
> 
> Renee
> 
> 
> 
> From: Shepherd, Lori 
> Sent: 16 March 2020 15:47
> To: Menezes, R. (Ren�e)
> Cc: Ren�e Menezes
> Subject: Re: Bioconductor package SIM
> 
> Please be aware your package is still failing.  This is very problematic.  The
> next Bioconductor release is scheduled for Tuesday April 28th. We appreciate
> your quick response in this matter. If your package remains broken we will 
> begin
> the deprecation process to remove the package from Bioconductor.
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> 
> From: Shepherd, Lori 
> Sent: Thursday, February 27, 2020 12:08 PM
> To: Menezes, R. (Ren�e) 
> Cc: r.mene...@nki.nl 
> Subject: Re: Bioconductor package SIM
> 
> Thank you! Please remember to update your email address in the DESCRIPTION of 
> the package when you make changes too.
> 
> Cheers,
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> 
> From: Menezes, R. (Ren�e) 
> Sent: Thursday, February 27, 2020 12:07 PM
> To: Shepherd, Lori 
> Cc: r.mene...@nki.nl 
> Subject: Re: Bioconductor package SIM
> 
> Dear Lori,
> 
> Thanks for your email. I saw the previous email but have not had the time to 
> look at the problem. I have recently changed jobs (my new email address is in 
> cc) and it has been really busy in the last few weeks.
> 
> I will look at the issue ASAP.
> 
> Kind regards,
> Renee
> 
> Renee X. de Menezes
> Lecturer, Dept. Epidemiology and Biostatistics, VUmc
> r.mene...@vumc.nl
> http://www.bigstatistics.nl/renee
> 
> 
> 
> 
> 
> Van: Shepherd, Lori 
> Verzonden: donderdag 27 februari 2020 17:36
> Aan: Menezes, R. (Ren�e) 
> Onderwerp: Bioconductor package SIM
> 
> Dear Package Maintainer,
> 
> We would like to bring to your attention that your package is failing to 
> build/check on our devel build machines:
> 
> http://bioconductor.org/checkResults/devel/bioc-LATEST/SIM
> 
> Would you mind taking a look at this? Don't hesitate to ask on the bioc-devel 
> mailing list if you have any question or need help.
> 
> While the development branch is a place to develop new features and we expect 
> packages to occasionally break,  they should not remain broken for an 
> extended period of time.   If no action is taken over the next few weeks we 
> will begin the deprecation process for your package.  The package has been 
> failing since at least 01/24/20.  Thank you for your time and effort.
> 
> We notified you of your package failure in a group message entitled 
> "Bioconductor Package Needs Update"  back on 01/27/20.
> 
> Please see https://stat.ethz.ch/pipermail/bioc-devel/2020-January/016081.html
> 
> Information can also be found on the troubleshooting build page of the 
> website:
> http://bioconductor.org/developers/how-to/troubleshoot-build-report/
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> This email message may contain legally privileged and/or confidential 
> information. If you are not the intended recipient(s), or the employee or 
> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited. If you have 
> received this message in error, please notify the sender immediately by 
> e-mail and delete this email message from your computer. Thank you.
> __
> VUmc disclaimer : www.vumc.nl/disclaimer
> AMC disclaimer : www.amc.nl/disclaimer
> 
> This email message may contain legally privileged and/or confidential 
> information. If you are not the intended recipient(s), or the employee or 
> agent responsible

Re: [Bioc-devel] Fw: Bioconductor package SIM

2020-03-17 Thread Turaga, Nitesh 
You'll have to activate your account first, 

https://git.bioconductor.org/BiocCredentials/account_activation/



> On Mar 17, 2020, at 5:11 PM, ni41435_ca  wrote:
> 
> The SIM package is registered to mboetze...@hotmail.com.
> 
> You can change the email on BiocCredentials app yourself.
> 
> Best,
> 
> Nitesh 
> 
>> On Mar 17, 2020, at 11:52 AM, r.mene...@nki.nl wrote:
>> 
>> l.s.
>> 
>> 
>> I cannot seem to be able to activate my account on the bioconductor git. I 
>> get a message saying my email address (the same one on the package help 
>> file) is not associated with a maintainer of a Bioconductor package. The 
>> email address is write simply is
>> 
>> 
>> r.xavierdemene...@vumc.nl
>> 
>> 
>> as stated in the SIM package page.
>> 
>> 
>> I tried this on both firefox and chrome, and get the same error each time.
>> 
>> 
>> Is there anything I could be doing wrong?
>> 
>> 
>> Thanks in advance,
>> 
>> Renee
>> 
>> 
>> 
>> From: Shepherd, Lori 
>> Sent: 16 March 2020 15:47
>> To: Menezes, R. (Ren�e)
>> Cc: Ren�e Menezes
>> Subject: Re: Bioconductor package SIM
>> 
>> Please be aware your package is still failing.  This is very problematic.  
>> The
>> next Bioconductor release is scheduled for Tuesday April 28th. We appreciate
>> your quick response in this matter. If your package remains broken we will 
>> begin
>> the deprecation process to remove the package from Bioconductor.
>> 
>> 
>> 
>> Lori Shepherd
>> 
>> Bioconductor Core Team
>> 
>> Roswell Park Comprehensive Cancer Center
>> 
>> Department of Biostatistics & Bioinformatics
>> 
>> Elm & Carlton Streets
>> 
>> Buffalo, New York 14263
>> 
>> 
>> From: Shepherd, Lori 
>> Sent: Thursday, February 27, 2020 12:08 PM
>> To: Menezes, R. (Ren�e) 
>> Cc: r.mene...@nki.nl 
>> Subject: Re: Bioconductor package SIM
>> 
>> Thank you! Please remember to update your email address in the DESCRIPTION 
>> of the package when you make changes too.
>> 
>> Cheers,
>> 
>> 
>> Lori Shepherd
>> 
>> Bioconductor Core Team
>> 
>> Roswell Park Comprehensive Cancer Center
>> 
>> Department of Biostatistics & Bioinformatics
>> 
>> Elm & Carlton Streets
>> 
>> Buffalo, New York 14263
>> 
>> 
>> From: Menezes, R. (Ren�e) 
>> Sent: Thursday, February 27, 2020 12:07 PM
>> To: Shepherd, Lori 
>> Cc: r.mene...@nki.nl 
>> Subject: Re: Bioconductor package SIM
>> 
>> Dear Lori,
>> 
>> Thanks for your email. I saw the previous email but have not had the time to 
>> look at the problem. I have recently changed jobs (my new email address is 
>> in cc) and it has been really busy in the last few weeks.
>> 
>> I will look at the issue ASAP.
>> 
>> Kind regards,
>> Renee
>> 
>> Renee X. de Menezes
>> Lecturer, Dept. Epidemiology and Biostatistics, VUmc
>> r.mene...@vumc.nl
>> http://www.bigstatistics.nl/renee
>> 
>> 
>> 
>> 
>> 
>> Van: Shepherd, Lori 
>> Verzonden: donderdag 27 februari 2020 17:36
>> Aan: Menezes, R. (Ren�e) 
>> Onderwerp: Bioconductor package SIM
>> 
>> Dear Package Maintainer,
>> 
>> We would like to bring to your attention that your package is failing to 
>> build/check on our devel build machines:
>> 
>> http://bioconductor.org/checkResults/devel/bioc-LATEST/SIM
>> 
>> Would you mind taking a look at this? Don't hesitate to ask on the 
>> bioc-devel mailing list if you have any question or need help.
>> 
>> While the development branch is a place to develop new features and we 
>> expect packages to occasionally break,  they should not remain broken for an 
>> extended period of time.   If no action is taken over the next few weeks we 
>> will begin the deprecation process for your package.  The package has been 
>> failing since at least 01/24/20.  Thank you for your time and effort.
>> 
>> We notified you of your package failure in a group message entitled 
>> "Bioconductor Package Needs Update"  back on 01/27/20.
>> 
>> Please see https://stat.ethz.ch/pipermail/bioc-devel/2020-January/016081.html
>> 
>> Information can also be found on the troubleshooting build page of the 
>> website:
>> http://bioconductor.org/developers/how-to/troubleshoot-build-report/
>> 
>> 
>> 
>> Lori Shepherd
>> 
>> Bioconductor Core Team
>> 
>> Roswell Park Comprehensive Cancer Center
>> 
>> Department of Biostatistics & Bioinformatics
>> 
>> Elm & Carlton Streets
>> 
>> Buffalo, New York 14263
>> 
>> This email message may contain legally privileged and/or confidential 
>> information. If you are not the intended recipient(s), or the employee or 
>> agent responsible for the delivery of this message to the intended 
>> recipient(s), you are hereby notified that any disclosure, copying, 
>> distribution, or use of this email message is prohibited. If you have 
>> received this message in error, please notify the sender immediately by 
>> e-mail and delete this email message