Re: [Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette
Yes, it was just fixed in R-devel, cf. https://bugs.r-project.org/show_bug.cgi?id=18443. /Henrik On Fri, Dec 9, 2022 at 7:38 AM Lluís Revilla wrote: > > Hi Rory, > > There was a recent change in R devel ( > https://cran.r-project.org/doc/manuals/r-devel/NEWS.html): > - sessionInfo() records (and by default prints) the system time zone as > part of the locale information. > It was reported a couple of days ago in the R-devel mailing list by Henrik > Bengtsson, that time zones with underscores caused problems which seems to > be your case with the New_York time zone. > This will probably be fixed at the R core level. > > The other option would be to set the local time to another timezone (you or > the Bioconductor core team). > > Best, > > Lluís > > On Fri, 9 Dec 2022 at 16:01, Rory Stark via Bioc-devel < > bioc-devel@r-project.org> wrote: > > > My packages are failing in the Development build due to something going > > wrong processing the .Rnw vignettes. Looking around I see a number of other > > packages with similar errors. > > > > They mostly include this error: > > > > LaTeX errors: > > ! Missing $ inserted. > > > > $ > > l.4064 \item Time zone America/New_ > > York > > ! LaTeX Error: Command \item invalid in math mode. > > > > > > although the details differ on each platform. > > > > Something has changed in the environment (headers?) that I can't quite > > track down (the source documents have not changed). Is this a known issue? > > Any suggestions on resolving it? > > > > Rory > > > > > > [[alternative HTML version deleted]] > > > > ___ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette
Hi Rory, There was a recent change in R devel ( https://cran.r-project.org/doc/manuals/r-devel/NEWS.html): - sessionInfo() records (and by default prints) the system time zone as part of the locale information. It was reported a couple of days ago in the R-devel mailing list by Henrik Bengtsson, that time zones with underscores caused problems which seems to be your case with the New_York time zone. This will probably be fixed at the R core level. The other option would be to set the local time to another timezone (you or the Bioconductor core team). Best, Lluís On Fri, 9 Dec 2022 at 16:01, Rory Stark via Bioc-devel < bioc-devel@r-project.org> wrote: > My packages are failing in the Development build due to something going > wrong processing the .Rnw vignettes. Looking around I see a number of other > packages with similar errors. > > They mostly include this error: > > LaTeX errors: > ! Missing $ inserted. > > $ > l.4064 \item Time zone America/New_ > York > ! LaTeX Error: Command \item invalid in math mode. > > > although the details differ on each platform. > > Something has changed in the environment (headers?) that I can't quite > track down (the source documents have not changed). Is this a known issue? > Any suggestions on resolving it? > > Rory > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Packages failing Development build due to LaTex problem in .Rnw vignette
My packages are failing in the Development build due to something going wrong processing the .Rnw vignettes. Looking around I see a number of other packages with similar errors. They mostly include this error: LaTeX errors: ! Missing $ inserted. $ l.4064 \item Time zone America/New_ York ! LaTeX Error: Command \item invalid in math mode. although the details differ on each platform. Something has changed in the environment (headers?) that I can't quite track down (the source documents have not changed). Is this a known issue? Any suggestions on resolving it? Rory [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
