Re: [Bioc-devel] Question regarding pruning release of large files

2019-12-19 Thread Turaga, Nitesh
Hi Saskia,

Mike is correct, you cannot force push to the Bioconductor git repo. 

If you point me to the GitHub location, and you are confident that you want 
your repo overwritten, let me know I'll force push it for you.

Best,

Nitesh 


> On Dec 19, 2019, at 8:49 AM, Mike Smith  wrote:
> 
> Hi Saskia,
> 
> There's some documentation on this at
> https://bioconductor.org/developers/how-to/git/remove-large-data/
> 
> I guess the most pertinent part is "The Bioconductor git server does not
> allow -f or to force push to the git.bioconductor.org location. Please
> email bioc-devel@r-project.org explaining the package has been cleaned for
> large data files and needs to be reset.".  Seems like you've done the
> emailing part, so I'm sure someone will be in touch soon.
> 
> Mike
> 
> On Thu, 19 Dec 2019 at 05:20, Saskia Freytag <
> saskia.frey...@perkins.uwa.edu.au> wrote:
> 
>> Hi,
>> 
>> I stupidly added and tracked some large files in my package repo at the
>> start. I have since deleted these files and would like to permanently
>> remove them form my GitHub history. I have been able to this locally.
>> However when I try to do ‘git push upstream RELEASE_3_10’, it asks me to
>> fetch first. This results in the history being restored. I have tried to do
>> ‘git push —force’, but this results in an error. Is there any way to delete
>> the history of these files from the upstream?
>> 
>> Cheers,
>> 
>> Saskia
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>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 
> 
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Re: [Bioc-devel] Question regarding pruning release of large files

2019-12-19 Thread Mike Smith
Hi Saskia,

There's some documentation on this at
https://bioconductor.org/developers/how-to/git/remove-large-data/

I guess the most pertinent part is "The Bioconductor git server does not
allow -f or to force push to the git.bioconductor.org location. Please
email bioc-devel@r-project.org explaining the package has been cleaned for
large data files and needs to be reset.".  Seems like you've done the
emailing part, so I'm sure someone will be in touch soon.

Mike

On Thu, 19 Dec 2019 at 05:20, Saskia Freytag <
saskia.frey...@perkins.uwa.edu.au> wrote:

> Hi,
>
> I stupidly added and tracked some large files in my package repo at the
> start. I have since deleted these files and would like to permanently
> remove them form my GitHub history. I have been able to this locally.
> However when I try to do ‘git push upstream RELEASE_3_10’, it asks me to
> fetch first. This results in the history being restored. I have tried to do
> ‘git push —force’, but this results in an error. Is there any way to delete
> the history of these files from the upstream?
>
> Cheers,
>
> Saskia
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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[Bioc-devel] Question regarding pruning release of large files

2019-12-18 Thread Saskia Freytag
Hi,

I stupidly added and tracked some large files in my package repo at the start. 
I have since deleted these files and would like to permanently remove them form 
my GitHub history. I have been able to this locally. However when I try to do 
‘git push upstream RELEASE_3_10’, it asks me to fetch first. This results in 
the history being restored. I have tried to do ‘git push —force’, but this 
results in an error. Is there any way to delete the history of these files from 
the upstream?

Cheers,

Saskia
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