Re: [Bioc-devel] regarding imports github R packages, in new R package's description file
Ya so I can include git hub packages, in cran submission policy. *Thanks and Regards* *Krishan Gupta* *PhD16008PhD Scholar* On Fri, Apr 17, 2020 at 10:23 PM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > This mailing list is for Bioconductor package development and Bioconductor > submissions not CRAN. > > Bioconductor only allows dependencies from CRAN or Bioconductor and does > not allow github only repositories. > > If you indeed meant to submit to CRAN you should check with CRAN's > submission policies on what they allow: > https://cran.r-project.org/web/packages/policies.html > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of > Krishan Gupta > *Sent:* Friday, April 17, 2020 12:45 PM > *To:* bioc-devel@r-project.org > *Subject:* [Bioc-devel] regarding imports github R packages, in new R > package's description file > > I want to build a new package to submit on CRAN, but my package has > two dependencies harmony and iCTC which are available only on github. > So now I can import these dependencies in description files. > Imports: > BiocManager, > caret, > klaR, > randomForest, > gbm, > devtools, > harmony, > iCTC > I did as shown above but I got an error, > checking package dependencies ... ERROR > Packages required but not available: 'harmony', 'iCTC' > How can I resolve the error? > *Thanks and Regards* > > *Krishan Gupta* > > *PhD16008PhD Scholar* > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/1X7ntaZmDXfDBfzNmUV9Nn9nKY4Jf-6Xxjn3qQBu2ZaTpsT0kOgvP4ECgYOnsCzNJTEnBPotG0xHaX-4V2XjwJaBOvTpG5wRCgo6efcdZ1mNxtE9PBl4bxPEyX0tjV_wd5iBlgj1P5LTngGt_duprz0GJIpx5VXr1WVZ9tWC25wqY0B6cVCRkzDIoYJljiaxEzPncJSy2juwDmrYocyOcyTtydHeUEDV6JIuoKboTe7INnSLdVY0YPID2GCKwLWZ4jbEN8qCBKz1XsEXDeHRkfBaVE_B3svrDfI6VDWRpDC9T3EofkuMVMc64Z3XGuFqBy8WTm3_Qbd66QbJJKicKUw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] regarding imports github R packages, in new R package's description file
This mailing list is for Bioconductor package development and Bioconductor submissions not CRAN. Bioconductor only allows dependencies from CRAN or Bioconductor and does not allow github only repositories. If you indeed meant to submit to CRAN you should check with CRAN's submission policies on what they allow: https://cran.r-project.org/web/packages/policies.html Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel on behalf of Krishan Gupta Sent: Friday, April 17, 2020 12:45 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] regarding imports github R packages, in new R package's description file I want to build a new package to submit on CRAN, but my package has two dependencies harmony and iCTC which are available only on github. So now I can import these dependencies in description files. Imports: BiocManager, caret, klaR, randomForest, gbm, devtools, harmony, iCTC I did as shown above but I got an error, checking package dependencies ... ERROR Packages required but not available: 'harmony', 'iCTC' How can I resolve the error? *Thanks and Regards* *Krishan Gupta* *PhD16008PhD Scholar* [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1X7ntaZmDXfDBfzNmUV9Nn9nKY4Jf-6Xxjn3qQBu2ZaTpsT0kOgvP4ECgYOnsCzNJTEnBPotG0xHaX-4V2XjwJaBOvTpG5wRCgo6efcdZ1mNxtE9PBl4bxPEyX0tjV_wd5iBlgj1P5LTngGt_duprz0GJIpx5VXr1WVZ9tWC25wqY0B6cVCRkzDIoYJljiaxEzPncJSy2juwDmrYocyOcyTtydHeUEDV6JIuoKboTe7INnSLdVY0YPID2GCKwLWZ4jbEN8qCBKz1XsEXDeHRkfBaVE_B3svrDfI6VDWRpDC9T3EofkuMVMc64Z3XGuFqBy8WTm3_Qbd66QbJJKicKUw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] regarding imports github R packages, in new R package's description file
I want to build a new package to submit on CRAN, but my package has two dependencies harmony and iCTC which are available only on github. So now I can import these dependencies in description files. Imports: BiocManager, caret, klaR, randomForest, gbm, devtools, harmony, iCTC I did as shown above but I got an error, checking package dependencies ... ERROR Packages required but not available: 'harmony', 'iCTC' How can I resolve the error? *Thanks and Regards* *Krishan Gupta* *PhD16008PhD Scholar* [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
