Re: [Bioc-devel] report package issue to Bioconductor
On 01/06/2017 09:53 AM, Obenchain, Valerie wrote: > Hi, > > It looks like CorMut doesn't have a github repo so the best approach is > to contact the maintainer directly or cc them (zpl...@gmail.com) instead > of creating your own gist. Maybe you've tried this? Once the transition I should have been more clear here and said ... "Once the Bioconductor package repo has been transitioned from svn to git / github ...". The goal is to have the transition finalized before the spring release. Valerie > from svn to git / github is complete you can open issues or submit a > pull request directly to the package repo. > > Valerie > > On 01/03/2017 11:39 PM, Yu, Guangchuang wrote: >> Dear all, >> >> Some packages never updated after they publish a paper, and they just >> ignore bug report. >> >> I think we need somewhere, maybe on github, to post code review and >> Bioconductor core team can take action if maintainer fail to fix issue. >> >> Here is a quick look of the CorMut package: >> https://gist.github.com/GuangchuangYu/91b3396c7e49ab42c565a9cda3c35e18. >> >> There should be more issues than I can found with quick look of the source >> code. >> >> Best wishes, >> Guangchuang >> > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] report package issue to Bioconductor
Hi, It looks like CorMut doesn't have a github repo so the best approach is to contact the maintainer directly or cc them (zpl...@gmail.com) instead of creating your own gist. Maybe you've tried this? Once the transition from svn to git / github is complete you can open issues or submit a pull request directly to the package repo. Valerie On 01/03/2017 11:39 PM, Yu, Guangchuang wrote: > Dear all, > > Some packages never updated after they publish a paper, and they just > ignore bug report. > > I think we need somewhere, maybe on github, to post code review and > Bioconductor core team can take action if maintainer fail to fix issue. > > Here is a quick look of the CorMut package: > https://gist.github.com/GuangchuangYu/91b3396c7e49ab42c565a9cda3c35e18. > > There should be more issues than I can found with quick look of the source > code. > > Best wishes, > Guangchuang > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] report package issue to Bioconductor
Dear all, Some packages never updated after they publish a paper, and they just ignore bug report. I think we need somewhere, maybe on github, to post code review and Bioconductor core team can take action if maintainer fail to fix issue. Here is a quick look of the CorMut package: https://gist.github.com/GuangchuangYu/91b3396c7e49ab42c565a9cda3c35e18. There should be more issues than I can found with quick look of the source code. Best wishes, Guangchuang -- --~--~-~--~~~---~--~~ Guangchuang Yu, PhD Candidate State Key Laboratory of Emerging Infectious Diseases School of Public Health The University of Hong Kong Hong Kong SAR, China www: https://guangchuangyu.github.io -~--~~~~--~~--~--~--- [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel