On 07/28/2014 07:52 PM, Michael Lawrence wrote:
Thanks, should be fixed in devel S4Vectors.
Indeed. Thanks! H.
On Mon, Jul 28, 2014 at 6:46 PM, Hervé Pagès <hpa...@fhcrc.org <mailto:hpa...@fhcrc.org>> wrote: Hi Michael, Works if the DataFrame has columns: library(IRanges) DF1 <- DataFrame(aa=letters[1:4]) DF0 <- DF1[0] Then: > DF1 DataFrame with 4 rows and 1 column aa <character> 1 a 2 b 3 c 4 d > DF0 DataFrame with 4 rows and 0 columns > subset(DF1, c(FALSE, TRUE)) DataFrame with 2 rows and 1 column aa <character> 1 b 2 d OK. But: > subset(DF0, c(FALSE, TRUE)) Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : subscript is a logical vector with out-of-bounds TRUE values This currently causes subset() to fail on a GRanges object with no metadata cols. Thanks, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fhcrc.org <mailto:hpa...@fhcrc.org> Phone: (206) 667-5791 <tel:%28206%29%20667-5791> Fax: (206) 667-1319 <tel:%28206%29%20667-1319> _________________________________________________ Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/__listinfo/bioc-devel <https://stat.ethz.ch/mailman/listinfo/bioc-devel>
-- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
