Re: [Bioc-devel] Have trouble in push to master branch

2018-10-11 Thread Zhu, Lihua (Julie) 
Nitesh,
Thanks for fixing the issue! It works now.
Best regards,
Julie

On 10/11/18, 1:55 PM, "Bioc-devel on behalf of Jianhong Ou, Ph.D." 
 wrote:

Thank you Nitesh,



It works now.



Jianhong.



On 10/11/18, 1:53 PM, "Turaga, Nitesh"  
wrote:



Please try now. 



> On Oct 11, 2018, at 1:48 PM, Zhu, Lihua (Julie) 
 wrote:

> 

> Nitesh,

> 

> I encountered the same issue with CRISPRseek package. Could you 
please help? Thanks!

> 

> To 
https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=Rh4TcF-7dtBYsUoyoYakR6JT33jjesIPuWLpYOe0MTw=FQiC3JrYfggdNOkIvKFD1YBWJOwwr2ukBOgSW7K-Ihg=:packages/CRISPRseek.git

> ! [remote rejected] master -> master (pre-receive hook declined)

> error: failed to push some refs to 
'g...@git.bioconductor.org:packages/CRISPRseek.git'

> 

> Best regards,

> 

> Julie

> 

> On 10/11/18, 1:43 PM, "Bioc-devel on behalf of Turaga, Nitesh" 
 
wrote:

> 

>Hi Jianhong,

> 

> 

> 

>I’m looking into it now. 

> 

> 

> 

>Nitesh 

> 

> 

> 

>> On Oct 11, 2018, at 1:35 PM, Jianhong Ou, Ph.D. 
 wrote:

> 

>> 

> 

>> Hi,

> 

>> 

> 

>> I am trying to fix bug in my package. However, I got declined 
message:

> 

>> 

> 

>> 

> 

>> git push upstream master

> 

>> 

> 

>> Counting objects: 38, done.

> 

>> 

> 

>> Delta compression using up to 8 threads.

> 

>> 

> 

>> Compressing objects: 100% (26/26), done.

> 

>> 

> 

>> Writing objects: 100% (38/38), 6.16 KiB | 3.08 MiB/s, done.

> 

>> 

> 

>> Total 38 (delta 30), reused 16 (delta 12)

> 

>> 

> 

>> remote: Traceback (most recent call last):

> 

>> 

> 

>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", 
line 104, in 

> 

>> 

> 

>> remote: hooks_dict = read_bioc_conf(conf)

> 

>> 

> 

>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", 
line 60, in read_bioc_conf

> 

>> 

> 

>> remote: for hook in d[package]:

> 

>> 

> 

>> remote: KeyError: 'Package: NADfinder'

> 

>> 

> 

>> To 
https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=X0WooCCk3_DxndJDvyJOOlMSACg6AVEER4VTQcjlcEw=:packages/NADfinder.git

> 

>> 

> 

>> ! [remote rejected] master -> master (pre-receive hook declined)

> 

>> 

> 

>> error: failed to push some refs to 
'g...@git.bioconductor.org:packages/NADfinder.git'

> 

>> 

> 

>> How could I fix this? Thank you for your help.

> 

>> 

> 

>> Yours Sincerely,

> 

>> 

> 

>> Jianhong Ou

> 

>> 

> 

>> Email: jianhong...@duke.edu

> 

>> Bioinformatician II

> 

>> Department of Cell Biology

> 

>> Duke University School of Medicine

> 

>> Durham, NC, 27710

> 

>> 

> 

>> Confidentiality Notice:

> 

>> This e-mail message, including any attachments, is for the sole use 
of the intended recipient(s) and may contain confidential, proprietary and 
privileged information. Any unauthorized review, use, disclosure or 
distribution is prohibited. If you are not the intended recipient, please 
contact the sender immediately and destroy or permanently delete all copies of 
the original message.

> 

>>

Re: [Bioc-devel] Have trouble in push to master branch

2018-10-11 Thread Jianhong Ou, Ph.D. 
Thank you Nitesh,

It works now.

Jianhong.

On 10/11/18, 1:53 PM, "Turaga, Nitesh"  wrote:

Please try now. 

> On Oct 11, 2018, at 1:48 PM, Zhu, Lihua (Julie)  
wrote:
> 
> Nitesh,
> 
> I encountered the same issue with CRISPRseek package. Could you please 
help? Thanks!
> 
> To git.bioconductor.org:packages/CRISPRseek.git
> ! [remote rejected] master -> master (pre-receive hook declined)
> error: failed to push some refs to 
'g...@git.bioconductor.org:packages/CRISPRseek.git'
> 
> Best regards,
> 
> Julie
> 
> On 10/11/18, 1:43 PM, "Bioc-devel on behalf of Turaga, Nitesh" 
 
wrote:
> 
>Hi Jianhong,
> 
> 
> 
>I’m looking into it now. 
> 
> 
> 
>Nitesh 
> 
> 
> 
>> On Oct 11, 2018, at 1:35 PM, Jianhong Ou, Ph.D.  
wrote:
> 
>> 
> 
>> Hi,
> 
>> 
> 
>> I am trying to fix bug in my package. However, I got declined message:
> 
>> 
> 
>> 
> 
>> git push upstream master
> 
>> 
> 
>> Counting objects: 38, done.
> 
>> 
> 
>> Delta compression using up to 8 threads.
> 
>> 
> 
>> Compressing objects: 100% (26/26), done.
> 
>> 
> 
>> Writing objects: 100% (38/38), 6.16 KiB | 3.08 MiB/s, done.
> 
>> 
> 
>> Total 38 (delta 30), reused 16 (delta 12)
> 
>> 
> 
>> remote: Traceback (most recent call last):
> 
>> 
> 
>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 
104, in 
> 
>> 
> 
>> remote: hooks_dict = read_bioc_conf(conf)
> 
>> 
> 
>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 
60, in read_bioc_conf
> 
>> 
> 
>> remote: for hook in d[package]:
> 
>> 
> 
>> remote: KeyError: 'Package: NADfinder'
> 
>> 
> 
>> To 
https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=X0WooCCk3_DxndJDvyJOOlMSACg6AVEER4VTQcjlcEw=:packages/NADfinder.git
> 
>> 
> 
>> ! [remote rejected] master -> master (pre-receive hook declined)
> 
>> 
> 
>> error: failed to push some refs to 
'g...@git.bioconductor.org:packages/NADfinder.git'
> 
>> 
> 
>> How could I fix this? Thank you for your help.
> 
>> 
> 
>> Yours Sincerely,
> 
>> 
> 
>> Jianhong Ou
> 
>> 
> 
>> Email: jianhong...@duke.edu
> 
>> Bioinformatician II
> 
>> Department of Cell Biology
> 
>> Duke University School of Medicine
> 
>> Durham, NC, 27710
> 
>> 
> 
>> Confidentiality Notice:
> 
>> This e-mail message, including any attachments, is for the sole use of 
the intended recipient(s) and may contain confidential, proprietary and 
privileged information. Any unauthorized review, use, disclosure or 
distribution is prohibited. If you are not the intended recipient, please 
contact the sender immediately and destroy or permanently delete all copies of 
the original message.
> 
>> 
> 
>>  [[alternative HTML version deleted]]
> 
>> 
> 
>> ___
> 
>> Bioc-devel@r-project.org mailing list
> 
>> 
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=
> 
> 
> 
> 
> 
>This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
>___
>Bioc-devel@r-project.org mailing list
>
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=



This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended

Re: [Bioc-devel] Have trouble in push to master branch

2018-10-11 Thread Turaga, Nitesh 
Please try now. 

> On Oct 11, 2018, at 1:48 PM, Zhu, Lihua (Julie)  
> wrote:
> 
> Nitesh,
> 
> I encountered the same issue with CRISPRseek package. Could you please help? 
> Thanks!
> 
> To git.bioconductor.org:packages/CRISPRseek.git
> ! [remote rejected] master -> master (pre-receive hook declined)
> error: failed to push some refs to 
> 'g...@git.bioconductor.org:packages/CRISPRseek.git'
> 
> Best regards,
> 
> Julie
> 
> On 10/11/18, 1:43 PM, "Bioc-devel on behalf of Turaga, Nitesh" 
>  
> wrote:
> 
>Hi Jianhong,
> 
> 
> 
>I’m looking into it now. 
> 
> 
> 
>Nitesh 
> 
> 
> 
>> On Oct 11, 2018, at 1:35 PM, Jianhong Ou, Ph.D.  wrote:
> 
>> 
> 
>> Hi,
> 
>> 
> 
>> I am trying to fix bug in my package. However, I got declined message:
> 
>> 
> 
>> 
> 
>> git push upstream master
> 
>> 
> 
>> Counting objects: 38, done.
> 
>> 
> 
>> Delta compression using up to 8 threads.
> 
>> 
> 
>> Compressing objects: 100% (26/26), done.
> 
>> 
> 
>> Writing objects: 100% (38/38), 6.16 KiB | 3.08 MiB/s, done.
> 
>> 
> 
>> Total 38 (delta 30), reused 16 (delta 12)
> 
>> 
> 
>> remote: Traceback (most recent call last):
> 
>> 
> 
>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 104, 
>> in 
> 
>> 
> 
>> remote: hooks_dict = read_bioc_conf(conf)
> 
>> 
> 
>> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 60, 
>> in read_bioc_conf
> 
>> 
> 
>> remote: for hook in d[package]:
> 
>> 
> 
>> remote: KeyError: 'Package: NADfinder'
> 
>> 
> 
>> To 
>> https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=X0WooCCk3_DxndJDvyJOOlMSACg6AVEER4VTQcjlcEw=:packages/NADfinder.git
> 
>> 
> 
>> ! [remote rejected] master -> master (pre-receive hook declined)
> 
>> 
> 
>> error: failed to push some refs to 
>> 'g...@git.bioconductor.org:packages/NADfinder.git'
> 
>> 
> 
>> How could I fix this? Thank you for your help.
> 
>> 
> 
>> Yours Sincerely,
> 
>> 
> 
>> Jianhong Ou
> 
>> 
> 
>> Email: jianhong...@duke.edu
> 
>> Bioinformatician II
> 
>> Department of Cell Biology
> 
>> Duke University School of Medicine
> 
>> Durham, NC, 27710
> 
>> 
> 
>> Confidentiality Notice:
> 
>> This e-mail message, including any attachments, is for the sole use of the 
>> intended recipient(s) and may contain confidential, proprietary and 
>> privileged information. Any unauthorized review, use, disclosure or 
>> distribution is prohibited. If you are not the intended recipient, please 
>> contact the sender immediately and destroy or permanently delete all copies 
>> of the original message.
> 
>> 
> 
>>  [[alternative HTML version deleted]]
> 
>> 
> 
>> ___
> 
>> Bioc-devel@r-project.org mailing list
> 
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=
> 
> 
> 
> 
> 
>This email message may contain legally privileged and/or confidential 
> information.  If you are not the intended recipient(s), or the employee or 
> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited.  If you have 
> received this message in error, please notify the sender immediately by 
> e-mail and delete this email message from your computer. Thank you.
>___
>Bioc-devel@r-project.org mailing list
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=



This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] Have trouble in push to master branch

2018-10-11 Thread Zhu, Lihua (Julie) 
Nitesh,

I encountered the same issue with CRISPRseek package. Could you please help? 
Thanks!

To git.bioconductor.org:packages/CRISPRseek.git
 ! [remote rejected] master -> master (pre-receive hook declined)
error: failed to push some refs to 
'g...@git.bioconductor.org:packages/CRISPRseek.git'

Best regards,

Julie

On 10/11/18, 1:43 PM, "Bioc-devel on behalf of Turaga, Nitesh" 
 
wrote:

Hi Jianhong,



I’m looking into it now. 



Nitesh 



> On Oct 11, 2018, at 1:35 PM, Jianhong Ou, Ph.D.  
wrote:

> 

> Hi,

> 

> I am trying to fix bug in my package. However, I got declined message:

> 

> 

> git push upstream master

> 

> Counting objects: 38, done.

> 

> Delta compression using up to 8 threads.

> 

> Compressing objects: 100% (26/26), done.

> 

> Writing objects: 100% (38/38), 6.16 KiB | 3.08 MiB/s, done.

> 

> Total 38 (delta 30), reused 16 (delta 12)

> 

> remote: Traceback (most recent call last):

> 

> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 
104, in 

> 

> remote: hooks_dict = read_bioc_conf(conf)

> 

> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 
60, in read_bioc_conf

> 

> remote: for hook in d[package]:

> 

> remote: KeyError: 'Package: NADfinder'

> 

> To 
https://urldefense.proofpoint.com/v2/url?u=http-3A__git.bioconductor.org=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=X0WooCCk3_DxndJDvyJOOlMSACg6AVEER4VTQcjlcEw=:packages/NADfinder.git

> 

> ! [remote rejected] master -> master (pre-receive hook declined)

> 

> error: failed to push some refs to 
'g...@git.bioconductor.org:packages/NADfinder.git'

> 

> How could I fix this? Thank you for your help.

> 

> Yours Sincerely,

> 

> Jianhong Ou

> 

> Email: jianhong...@duke.edu

> Bioinformatician II

> Department of Cell Biology

> Duke University School of Medicine

> Durham, NC, 27710

> 

> Confidentiality Notice:

> This e-mail message, including any attachments, is for the sole use of 
the intended recipient(s) and may contain confidential, proprietary and 
privileged information. Any unauthorized review, use, disclosure or 
distribution is prohibited. If you are not the intended recipient, please 
contact the sender immediately and destroy or permanently delete all copies of 
the original message.

> 

>   [[alternative HTML version deleted]]

> 

> ___

> Bioc-devel@r-project.org mailing list

> 
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=





This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
___
Bioc-devel@r-project.org mailing list

https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwIGaQ=WJBj9sUF1mbpVIAf3biu3CPHX4MeRjY_w4DerPlOmhQ=3IbW-yoIQpGZOKgd4i2bgmPHhwHHF5gJMlij5cC5bLU=ldl4cdibkRktwLiyZ6niwklGYISVFGeXm27fs_BVZbo=y076zi8egi3Wxsj_fyaMHN2Kk4_PEjXk1opgpL4Kqtk=


___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] Have trouble in push to master branch

2018-10-11 Thread Turaga, Nitesh 
Hi Jianhong,

I’m looking into it now. 

Nitesh 

> On Oct 11, 2018, at 1:35 PM, Jianhong Ou, Ph.D.  wrote:
> 
> Hi,
> 
> I am trying to fix bug in my package. However, I got declined message:
> 
> 
> git push upstream master
> 
> Counting objects: 38, done.
> 
> Delta compression using up to 8 threads.
> 
> Compressing objects: 100% (26/26), done.
> 
> Writing objects: 100% (38/38), 6.16 KiB | 3.08 MiB/s, done.
> 
> Total 38 (delta 30), reused 16 (delta 12)
> 
> remote: Traceback (most recent call last):
> 
> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 104, 
> in 
> 
> remote: hooks_dict = read_bioc_conf(conf)
> 
> remote:   File "hooks/pre-receive.h00-pre-receive-hook-software", line 60, in 
> read_bioc_conf
> 
> remote: for hook in d[package]:
> 
> remote: KeyError: 'Package: NADfinder'
> 
> To git.bioconductor.org:packages/NADfinder.git
> 
> ! [remote rejected] master -> master (pre-receive hook declined)
> 
> error: failed to push some refs to 
> 'g...@git.bioconductor.org:packages/NADfinder.git'
> 
> How could I fix this? Thank you for your help.
> 
> Yours Sincerely,
> 
> Jianhong Ou
> 
> Email: jianhong...@duke.edu
> Bioinformatician II
> Department of Cell Biology
> Duke University School of Medicine
> Durham, NC, 27710
> 
> Confidentiality Notice:
> This e-mail message, including any attachments, is for the sole use of the 
> intended recipient(s) and may contain confidential, proprietary and 
> privileged information. Any unauthorized review, use, disclosure or 
> distribution is prohibited. If you are not the intended recipient, please 
> contact the sender immediately and destroy or permanently delete all copies 
> of the original message.
> 
>   [[alternative HTML version deleted]]
> 
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
___
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel