Re: [Bioc-devel] No Windows binary for GenomicRanges
Thanks. I confirm that it installs for me now in R-3.5.0alpha for Windows. Gordon > -Original Message- > From: Hervé Pagès <hpa...@fredhutch.org> > Sent: Thursday, 29 March 2018 3:42 PM > To: Gordon K Smyth <sm...@wehi.edu.au>; bioc-devel@r-project.org > Subject: Re: [Bioc-devel] No Windows binary for GenomicRanges > > Hi Gordon, > > The TIMEOUT that was preventing the Windows binary of GenomicRanges > from propagating has been addressed. The latest version of the package > (1.31.23) is now available for BioC devel users on all platforms via > biocLite(). > > Cheers, > H. > > > On 03/19/2018 10:01 AM, Hervé Pagès wrote: > > Hi Gordon, > > > > We're seeing a number of abnormal/unexpected TIMEOUTs on tokay2: > > > > > > https://urldefense.proofpoint.com/v2/url?u=https- > 3A__bioconductor.org_checkResults_3.7_bioc-2DLATEST_tokay2-2Dindex.html- > 23show- > 3Dtimeout=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=HjFin7ZZwuYWdlO8wv > E3KmoPwjRiq-bV_UKHWdKLLP4=jWxbIgfo7qej- > qcydrB9NnzlvmwboSkvQFAWN6Fca1g=wj8zdVvqh_ucm_lMqZOzC37n85vndqh > vSfqgMTjTMOg= > > > > > > These TIMEOUTs have been preventing the Windows binaries of the > > corresponding packages to propagate. We're currently investigating > > the cause of these TIMEOUTs and will let you know. > > > > Sorry for the inconvenience. > > > > H. > > > > > > On 03/18/2018 07:35 PM, Gordon K Smyth wrote: > >> There has been no Windows binary for the GenomicRanges package since > >> version 1.31.12, which was nearly 2 months ago. > >> > >> This means that I can't install GenomicFeatures either, because it > >> depends on a later version of GenomicRanges, so the whole Bioc ranges > >> infrastructure is incapacitated. > >> > >> What is the ETA for a Windows version? I notice there haven't been any > >> commits to GenomicRanges since 27 Feb. > >> > >> Gordon > >> > >> -- > >> Professor Gordon K Smyth > >> Head, Bioinformatics Division > >> Walter and Eliza Hall Institute of Medical Research > >> > >> ___ > >> Bioc-devel@r-project.org mailing list > >> https://urldefense.proofpoint.com/v2/url?u=https- > 3A__stat.ethz.ch_mailman_listinfo_bioc- > 2Ddevel=DwICAg=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY > _wJYbW0WYiZvSXAJJKaaPhzWA=NrBBRFv3CReEoWizyQHKlkyTU3dgJ1g0EEV > frBK3-Io=QlSpRQkMeHpZXcbywJfyWc5ehC8aLRdx5oHlJsyVGDA= > >> > >> > > > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] No Windows binary for GenomicRanges
Hi Gordon, The TIMEOUT that was preventing the Windows binary of GenomicRanges from propagating has been addressed. The latest version of the package (1.31.23) is now available for BioC devel users on all platforms via biocLite(). Cheers, H. On 03/19/2018 10:01 AM, Hervé Pagès wrote: Hi Gordon, We're seeing a number of abnormal/unexpected TIMEOUTs on tokay2: https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.7_bioc-2DLATEST_tokay2-2Dindex.html-23show-3Dtimeout=DwIFaQ=eRAMFD45gAfqt84VtBcfhQ=HjFin7ZZwuYWdlO8wvE3KmoPwjRiq-bV_UKHWdKLLP4=jWxbIgfo7qej-qcydrB9NnzlvmwboSkvQFAWN6Fca1g=wj8zdVvqh_ucm_lMqZOzC37n85vndqhvSfqgMTjTMOg= These TIMEOUTs have been preventing the Windows binaries of the corresponding packages to propagate. We're currently investigating the cause of these TIMEOUTs and will let you know. Sorry for the inconvenience. H. On 03/18/2018 07:35 PM, Gordon K Smyth wrote: There has been no Windows binary for the GenomicRanges package since version 1.31.12, which was nearly 2 months ago. This means that I can't install GenomicFeatures either, because it depends on a later version of GenomicRanges, so the whole Bioc ranges infrastructure is incapacitated. What is the ETA for a Windows version? I notice there haven't been any commits to GenomicRanges since 27 Feb. Gordon -- Professor Gordon K Smyth Head, Bioinformatics Division Walter and Eliza Hall Institute of Medical Research ___ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwICAg=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=NrBBRFv3CReEoWizyQHKlkyTU3dgJ1g0EEVfrBK3-Io=QlSpRQkMeHpZXcbywJfyWc5ehC8aLRdx5oHlJsyVGDA= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] No Windows binary for GenomicRanges
Hi Gordon, We're seeing a number of abnormal/unexpected TIMEOUTs on tokay2: https://bioconductor.org/checkResults/3.7/bioc-LATEST/tokay2-index.html#show=timeout These TIMEOUTs have been preventing the Windows binaries of the corresponding packages to propagate. We're currently investigating the cause of these TIMEOUTs and will let you know. Sorry for the inconvenience. H. On 03/18/2018 07:35 PM, Gordon K Smyth wrote: There has been no Windows binary for the GenomicRanges package since version 1.31.12, which was nearly 2 months ago. This means that I can't install GenomicFeatures either, because it depends on a later version of GenomicRanges, so the whole Bioc ranges infrastructure is incapacitated. What is the ETA for a Windows version? I notice there haven't been any commits to GenomicRanges since 27 Feb. Gordon -- Professor Gordon K Smyth Head, Bioinformatics Division Walter and Eliza Hall Institute of Medical Research ___ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel=DwICAg=eRAMFD45gAfqt84VtBcfhQ=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA=NrBBRFv3CReEoWizyQHKlkyTU3dgJ1g0EEVfrBK3-Io=QlSpRQkMeHpZXcbywJfyWc5ehC8aLRdx5oHlJsyVGDA= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
