Hi Jason,
Note that https://bioconductor.org/developers/how-to/git/ has a
collection of documents that cover all the aspects of maintaining
a Bioconductor package via git/GitHub.
In particular see "New package workflow" for what to do after package
acceptance and "Push to GitHub and Bioconductor repositories" for
everyday development of your package.
I hope you'll find these documents as helpful as I do.
Cheers,
H.
On 09/17/2017 11:15 AM, Shepherd, Lori wrote:
1. Yes. If you package was accepted and is on g...@git.bioconductor.org
then it is set to be included in the next release version of Bioconductor. You
do not need to do anything; the Bioconductor team will handle making
appropriate branches to the repository.
2. You can add changes to Bioconductor devel at any time. The master
branch of the repository is the devel branch of Bioconductor. If you push
changes to the master branch of your package on g...@git.bioconductor.org (with
appropriate version bump) it will be reflected in the next Bioconducotor devel
build report.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Weirather, Jason L.
Sent: Friday, September 15, 2017 10:45:18 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Question about inclusion in upcoming bioconductor
Dear Bioconductor Team,
I had a couple of quick questions
1) Is our package set to go into the next Bioconductor if it�s made it through
the submission process and we have access to the Bioconductor git repository?
Is the master branch for that properly staged for the upcoming release, or do
we need to do anything else like make some release branch or tick version or
anything like that?
2) If I want some newer changes to go into Bioconductor devel, do I just make a
devel branch on the git repository?
For context, I have recently helped Dr. Dan Gusenleitner with submission of the
�IrisSpatialFeatures� package. Now the package has made it through the
pipeline to be accepted, and I have access to the bioconductor git repository
for our package.
We are excited it for it to make it out into the wider community and just
wanted to make sure we have is staged properly.
Thank you for your advice,
Jason
The information in this e-mail is intended only for the ...{{dropped:28}}
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