[Blends-commit] [Git][blends-team/med][master] Added python-pyflow

2019-08-02 Thread Steffen Möller


Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
ffac2a47 by Steffen Möller at 2019-08-02T16:46:17Z
Added python-pyflow

Somewhat problematic since this has apparently not yet seen the light of Python3
- - - - -


1 changed file:

- tasks/bio


Changes:

=
tasks/bio
=
@@ -1221,6 +1221,8 @@ Recommends: r-cran-tcr, r-cran-tigger, r-cran-alakazam, 
r-cran-shazam, igor, r-c
 
 Recommends: ncbi-igblast
 
+Suggests: python-pyflow
+
 X-Mark: The information below needs to be checked whether it can be obtained 
from Vcs or needs to stay here
 
 Recommends: copycat



View it on GitLab: 
https://salsa.debian.org/blends-team/med/commit/ffac2a472d452a23c2ccbcf9bdf14122d2c874bc

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[Blends-commit] [Git][blends-team/med][master] Updated bio-dev with python3-pycosat

2019-08-02 Thread Steffen Möller


Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
57798c0b by Steffen Möller at 2019-08-02T13:57:30Z
Updated bio-dev with python3-pycosat

Found locally.
- - - - -


1 changed file:

- tasks/bio-dev


Changes:

=
tasks/bio-dev
=
@@ -22,6 +22,8 @@ Suggests: python3-biopython-sql, python-biopython-doc
 
 Recommends: python-cogent
 
+Suggests: python3-pycosat
+
 Recommends: python-screed
 
 Recommends: python3-cutadapt



View it on GitLab: 
https://salsa.debian.org/blends-team/med/commit/57798c0b87cfe676c2dae7406afb780df7a32e63

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[Blends-commit] [Git][blends-team/med][master] Added packages referenced for bcbio

2019-08-02 Thread Steffen Möller


Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
33de5479 by Steffen Möller at 2019-08-02T10:57:43Z
Added packages referenced for bcbio
- - - - -


1 changed file:

- tasks/bio


Changes:

=
tasks/bio
=
@@ -48,6 +48,8 @@ Remark: Dead upstream
 
 Recommends: boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, 
tabix, tophat, wise
 
+Suggest: tophat-recondition
+
 Recommends: maqview
 
 Recommends: blasr
@@ -284,8 +286,12 @@ Recommends: ballview
 
 Recommends: pynast
 
+Recommends: pizzly
+
 Recommends: raxml
 
+Recommends: seqcluster
+
 Recommends: mlv-smile
 
 Suggests: cain
@@ -1124,6 +1130,8 @@ Recommends: stacks
 Recommends: strap, strap-base
 Language: Java
 
+Suggests: strelka
+
 Recommends: stringtie
 
 Recommends: subread



View it on GitLab: 
https://salsa.debian.org/blends-team/med/commit/33de54790d32c45221809d8c9ef9cb899f7e2d96

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