[Blends-commit] [Git][blends-team/med][master] Add veryfasttree

2023-07-06 Thread Andreas Tille (@tille) 


Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
b16e529a by Andreas Tille at 2023-07-04T10:23:11+02:00
Add veryfasttree

- - - - -


4 changed files:

- debian/changelog
- tasks/bio
- tasks/bio-phylogeny
- tasks/cloud


Changes:

=
debian/changelog
=
@@ -1,3 +1,9 @@
+debian-med (3.8.2) UNRELEASED; urgency=medium
+
+  * 
+
+ -- Andreas Tille   Tue, 04 Jul 2023 10:23:01 +0200
+
 debian-med (3.8.1) unstable; urgency=medium
 
   * Standards-Version: 4.6.2


=
tasks/bio
=
@@ -676,7 +676,7 @@ Recommends: fasta3
 
 Recommends: fastani
 
-Recommends: fasttree
+Recommends: fasttree, veryfasttree
 
 Recommends: fastahack
 


=
tasks/bio-phylogeny
=
@@ -15,6 +15,8 @@ Recommends: altree
 
 Recommends: fastdnaml, njplot, tree-puzzle | tree-ppuzzle
 
+Recommends: fasttree, veryfasttree
+
 Recommends: probalign
 
 Recommends: treeviewx


=
tasks/cloud
=
@@ -7,7 +7,8 @@ Description: Debian Med bioinformatics applications usable in 
cloud computing
 
 X-Begin-Category: Phylogenetic analysis
 Recommends: altree, clearcut, fastdnaml, fasttree, parsinsert, phyml,
-phyutility, prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle
+phyutility, prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle,
+veryfasttree
 X-End-Category: Phylogenetic analysis
 
 X-Begin-Category: Genetics and genomics



View it on GitLab: 
https://salsa.debian.org/blends-team/med/-/commit/b16e529a8ff9e89622b21bdd031dd7af59909ba3

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[Blends-commit] [Git][blends-team/med][master] mriconvert removed from Debian; r-cran-treescape replaced by r-cran-treespace

2023-07-06 Thread Andreas Tille (@tille) 


Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
9cbc707f by Andreas Tille at 2023-07-06T09:38:11+02:00
mriconvert removed from Debian; r-cran-treescape replaced by r-cran-treespace

- - - - -


3 changed files:

- debian/changelog
- tasks/bio
- tasks/imaging


Changes:

=
debian/changelog
=
@@ -1,6 +1,7 @@
 debian-med (3.8.2) UNRELEASED; urgency=medium
 
-  * 
+  * mriconvert removed from Debian
+  * r-cran-treescape replaced by r-cran-treespace
 
  -- Andreas Tille   Tue, 04 Jul 2023 10:23:01 +0200
 


=
tasks/bio
=
@@ -1361,7 +1361,7 @@ Recommends: r-cran-seqinr
 
 Recommends: r-cran-spp
 
-Recommends: r-cran-treescape
+Recommends: r-cran-treespace
 
 Recommends: r-cran-tsne
 


=
tasks/imaging
=
@@ -497,8 +497,6 @@ Recommends: ants
 
 Recommends: itksnap
 
-Recommends: mriconvert
-
 Recommends: mia-tools, mialmpick, mia-viewit
 
 Recommends: ismrmrd-tools



View it on GitLab: 
https://salsa.debian.org/blends-team/med/-/commit/9cbc707f2560f4366ff66e46e1f51461dd92a64f

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https://salsa.debian.org/blends-team/med/-/commit/9cbc707f2560f4366ff66e46e1f51461dd92a64f
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