Hi, I’ve been having issues with the filesystem that holds /gnu/store recently, causing corrupted/broken files. When trying to repair these broken files with `guix gc --verify=repair,contents` it properly detects that store items’ hashes do not match the ones recorded in the database and redownloads/rebuilds them. However, the corrupted store items are never actually repaired – not by `guix gc` and not by `guix build --repair`. Attached is a testcase showing that deduplication is the problem, because repairing will just hardlink the (broken) deduplicated file instead of replacing it with the downloaded/built file. I tried the daemon’s `--disable-deduplication` too with same results.
Cheers, Lars
testcase.sh
Description: Bourne shell script
/gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10/bin/hello 0jxnp4f4rac2scvq9lhcvpr4n4w0zrx5wdhcqml4w7zfybbszswp -r-xr-xr-x 2 root root 0 19. Aug 13:54 /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10/bin/hello reading the store... checking path existence... checking hashes... path `/gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10' was modified! expected hash `9c61184c4b1af09639cee8148bc0c3d7aced4a671615a6e0a3e7ccb927848ffa', got `3330b928ba2d3cf6acfdb0ef3a359fb686eac7ee6e9d49a6515ef7b1701537cf' fetching path `/gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10'... Downloading https://ci.guix.gnu.org/nar/lzip/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10... hello-2.10 51KiB 528KiB/s 00:00 [##################] 100.0% -r-xr-xr-x 2 root root 0 1. Jan 1970 /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10/bin/hello path `/gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10' is corrupted or missing! Substituiere /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 … Lade von https://ci.guix.gnu.org/nar/lzip/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 herunter … hello-2.10 51KiB 482KiB/s 00:00 [##################] 100.0% /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 -r-xr-xr-x 2 root root 0 1. Jan 1970 /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10/bin/hello path `/gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10' is corrupted or missing! Substituiere /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 … Lade von https://ci.guix.gnu.org/nar/lzip/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 herunter … hello-2.10 51KiB 455KiB/s 00:00 [##################] 100.0% /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10 -r-xr-xr-x 2 root root 37K 1. Jan 1970 /gnu/store/a462kby1q51ndvxdv3b6p0rsixxrgx1h-hello-2.10/bin/hello
