Dear Donna,
thank you so much for your reply. Indeed I managed to get the info I needed
using the Statistical Paint Report and a very stripped down spec file (so
that the report contains only the relevant info). However I also prefer
scripts, so I will have a look at them (the caret_command must be a
goldmine indeed)
all the best,
leonardo
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Today's Topics:
1. Re: statistical report on areal enlargement (Donna Dierker)
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Message: 1
Date: Mon, 29 Jun 2015 13:54:26 -0500
From: Donna Dierker do...@brainvis.wustl.edu
To: Caret, SureFit, and SuMS software users
caret-users@brainvis.wustl.edu
Subject: Re: [caret-users] statistical report on areal enlargement
Message-ID: 51bf4f46-ced1-4792-8983-ed1dea6ae...@brainvis.wustl.edu
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Hi Leonardo,
It is possible that one more skilled than I could get Statistical Paint
Report to do what you want with less trouble. But for me, scripting it via
the command line would be more straightforward. Have a look at two scripts
here:
http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/anova_two_way.sh
http://brainmap.wustl.edu/pub/donna/WUSTL/BURTON/SCRIPTS/metric_region_mean.sh
login pub
password download
The anova_two_way.sh one has this bit:
caret_command -surface-region-of-interest-selection $COORD $TOPO $ROI
$ROI -paint $PAINT 1 $PAINT_NAME ANDNOT
And the metric_region_mean.sh has lines that might be handy.
See if you can frankenstein them together to do what you need, because I
suspect you will get tired of selecting each paint name in the Surface:
Region of Interest: select nodes with paint dialog.
Donna
On Jun 29, 2015, at 10:28 AM, Leonardo Cerliani
leonardo.cerli...@gmail.com wrote:
dear Donna,
I am trying to do something apparently simple, but cannot manage, so I
would like to ask your help.
I have loaded the areal expansion overlay onto the caret (contained in
the CARET_TUTORIAL_SEPT06/COMPARE_MACAQUE_HUMAN directory) and I would like
to have an estimate of the areal expansion for each area in the
(registered) LVE00 paint. Basically, an average areal expansion value over
each LVE00 region. I tried selecting all the nodes in the paint, and to
generate a statistical report, but I get only the average areal expansion
value over all the cortex. Is it really not possible to do that?
thank you in advance for your help,
leonardo
--
Leonardo Cerliani, PhD
Institut du Cerveau et de la Moelle ?pini?re (ICM)
47 Boulevard de l'H?pital, UMRS 975
Paris, France
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End of caret-users Digest, Vol 138, Issue 11
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Leonardo Cerliani, PhD
Institut du Cerveau et de la Moelle épinière (ICM)
47 Boulevard de l'Hôpital, UMRS 975
Paris, France
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