Re: [ccp4bb] QTMG font too small

[Khushboo Patel]

Thanks Paul and Stuart,

It works.

Khushboo



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Re: [ccp4bb] Refmac and hydrogens -developers

[Eleanor Dodson]

Yes - I am having problems with hydrogens in REFMAC recently - has
something changed?
My problem is this: Build a rough model for some residues into a lousy map.
(R ~ 32% etc..)
I know it is rough with clashes and bad geometry but trust refinement to
improve things a bit..
However if the run includes instruction BUILD hydrogens the structure sort
of explodes - R up to 39%.
If I dont do that REFMAC does fix things a bit - R drops a bit - ready for
more corrections..

I assume that now the hydrogens are generating restraints and these
restraints are blowing things up.

Surely hydrogens should not be allowed to do this?
Eleanor


On Thu, 21 May 2020 at 03:07, Bernhard Rupp 
wrote:

> Hi Fellows,
>
>
>
> for an experiment, I am running 0.9 A data with unrestrained Refmac (yes I
> know should/could use SHELXL, but let’s drop that for now).
>
>
>
> When I select ‘ignore even if present in file’ in a PDB that has
> hydrogens, I get the identical results than with ’use if present’ or
> ‘generate all’.
>
>
>
> The log informs me that the instructions were properly issued, the output
> PDB does not have Hs, but Rs and map are exactly the same
>
> as with selection of if present or generate all H. Does not seem to make
> sense.
>
>
>
> If I cull the hydrogens from the input PDB and ‘use if present’ or
> ‘ignore’, the stats and map are different and no H in output as requested
> -  all as expected.
>
>
>
> Maybe that can be reproduced and, if it is not a feature, fixed.
>
>
>
> Best, BR
>
> --
>
> Bernhard Rupp
>
> http://www.hofkristallamt.org/
>
> b...@hofkristallamt.org
>
> +1 925 209 7429
>
> +43 676 571 0536
>
> --
>
> Real knowledge is to know
>
> the extent of one's ignorance
>
> --
>
>
>
> --
>
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Re: [ccp4bb] QTMG font too small

[Stuart McNicholas]

Paul is completely correct. Just remember to click the "Apply" button after
changing "Application" font size.

Best wishes,
Stuart


On Thu, 21 May 2020 at 01:22, Paul Emsley  wrote:

> On 21/05/2020 01:00, Khushboo Patel wrote:
> > Hi Everyone,
> >
> > This is rather a silly question but the font of my QTMG is too small,
> screenshot attached.
> > I have tried everything from changing display settings on my mac to
> looking in preferences in QTMG software but cant seem to fix the problem.
> > Did anyone face the same problem? What can i do to make the fonts larger?
>
>
> Edit -> Preferences -> Display -> Fonts -> Application
>
> 
>
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