[ccp4bb] OneDep highlights curated assemblies for review in Mol*

2021-04-09 Thread Jasmine Young 
To improve the clarity of assembly definitions in curation, wwPDB now 
makes curated PDB assemblies available for depositors to view in OneDep 
using the Mol* viewer.


One of the important processes in curation of PDB entries is the 
definition of assemblies for each structure. This helps users of PDB 
data to understand the structure in the context of its complex formation 
in the specific experimental conditions.


To ensure that assemblies are curated correctly, they are reviewed by 
annotators at the time of curation before being reported back to the 
depositors after the curation process.


The deposition system in OneDep has now been enhanced so that after 
curation, the annotated assembly is displayed in the Mol* 3D viewer 
 for depositors to review. This viewer is 
available in a new Review section in the deposition interface, which is 
present after curation of the entry. The Mol* viewer can display PDB 
structure data within the browser with minimal memory requirements, 
therefore making it quick and easy to visually display assembly information.


These changes will help improve the validation and reporting of curated 
assemblies during the deposition process.



The assembly review page, as displayed for depositors after curation of 
the entry. The curated assembly is displayed in the Mol* 3D viewer, 
within the browser.
The assembly review page, as displayed for depositors after curation of 
the entry. The curated assembly is displayed in the Mol* 3D viewer, 
within the browser.



http://www.wwpdb.org/news/news?year=2021#604a58800769342b1f3d04b1


--
Regards,

Jasmine

===
Jasmine Young, Ph.D.
Biocuration Team Lead
RCSB Protein Data Bank
Research Professor
Institute for Quantitative Biomedicine
Rutgers, The State University of New Jersey
174 Frelinghuysen Rd
Piscataway, NJ 08854-8087

Email: jasm...@rcsb.rutgers.edu
Phone: (848)445-0103 ext 4920
Fax: (732)445-4320
===




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Re: [ccp4bb] weight matrix selection

2021-04-09 Thread Luca Mazzei 
Thanks Tim and Jon. It is a Macc laptop, the font size was too big and “manual” 
was not visible in the drop-down menù. Good to know. 

Best,

Luca

Luca Mazzei - PhD
Laboratory of Bioinorganic Chemistry
Department of Pharmacy and Biotechnology (FaBiT)
Alma Mater Studiorum - University of Bologna
Viale Giuseppe Fanin, 40 - 40127, Bologna - Italy
Tel: +39 0512096235




> Il giorno 8 apr 2021, alle ore 23:09, Jon Cooper 
> <488a26d62010-dmarc-requ...@jiscmail.ac.uk> ha scritto:
> 
> Good point. It looks like a mac to me ;-
> 
> Best wishes, Jon.C.
> 
> Sent from ProtonMail mobile
> 
> 
> 
>  Original Message 
> On 8 Apr 2021, 19:52, Tim Gruene < tim.gru...@univie.ac.at> wrote:
> 
> Dear Luca, did you click at the empty line below where it says 'automatic'? 
> Maybe the word 'manual' is just not visible for inappropriate colour 
> settings. Best wishes, Tim On Thu, 8 Apr 2021 18:14:35 +0200 Luca Mazzei 
> wrote: > Dear CCP4 people, > > I am trying to change manually the geometry 
> weight in Refmac, but > something funny is occurring. As you can see in the 
> snapshot I can > not switch from auto to manual. Suggestions? > > Thanks in 
> advance, > > Luca > > > Luca Mazzei - PhD > Laboratory of Bioinorganic 
> Chemistry > Department of Pharmacy and Biotechnology (FaBiT) > Alma Mater 
> Studiorum - University of Bologna > Viale Giuseppe Fanin, 40 - 40127, Bologna 
> - Italy > Tel: +39 0512096235 > > > > > > 
>  > > 
> To unsubscribe from the CCP4BB list, click the following link: > 
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> message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list 
> hosted by www.jiscmail.ac.uk, terms & conditions are > available at 
> https://www.jiscmail.ac.uk/policyandsecurity/ -- -- Tim Gruene Head of the 
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