Re: [ccp4bb] COOT 1.1 and Symmetry

[Paul Emsley]

On 12/07/2024 13:12, Karol Woloszyn wrote:


Hello,


Hello Karol,


I’m a COOT 1.1.09 user

exciting.

  on Fedora 40 as well as MacOS,

a rare breed.

  working on DNA model refinement.

OK...


I’ve noticed since updating to 1.1.09, the cell and symmetry master switch no 
longer brings up any symmetry molecules.
I don't see this myself. It could be that the symmetry is rendered as 
very thin lines - depending on your GTK version and driver settings.

  I remember in older versions (I was last most active on COOT 0.9.8) there was 
also a symmetry by molecule tab that is now missing as well.
Yes. It was too esoteric and intricately written with old-style GTK to 
be deemed necessary for 1 and 1.1. It will come back at some stage.

Am I missing a setting or is there another workaround this?


We need to first be sure the problem is not merely thin symmetry.

From a fresh start, Calculate -> Load Tutorial Model and Data then 
delete the maps, Then flip on the Symmetry Master switch. You should see 
a few greyish symmetry bonds appear, more if you increase the radius to 
30 or so.



Paul.



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[ccp4bb] COOT 1.1 and Symmetry

[Karol Woloszyn]

Hello,

I’m a COOT 1.1.09 user on Fedora 40 as well as MacOS, working on DNA model 
refinement. 

I’ve noticed since updating to 1.1.09, the cell and symmetry master switch no 
longer brings up any symmetry molecules. I remember in older versions (I was 
last most active on COOT 0.9.8) there was also a symmetry by molecule tab that 
is now missing as well. 

Am I missing a setting or is there another workaround this?

Thank you,
Karol


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Re: [ccp4bb] Insturct-ERIC msg from Joel - [ccp4bb] Instruct Funded Access Call - Early Career Research Call: Submit by 31 July!

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[ccp4bb] Instruct Funded Access Call - Early Career Research Call: Submit by 31 July!

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Dear All,

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