Re: [ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

[Alejandro Virrueta]

Found a solution. Thanks everyone!

On Tue, Sep 9, 2014 at 4:17 PM, Alejandro Virrueta <
alejandro.virru...@yale.edu> wrote:

> Does anyone knowhow to move the center pointer to a specific x,y,z
> coordinate? Or to place some kind of marker at a specific x,y,z coordinate?
>
> Thanks,
> Alex
>

[ccp4bb] Coot - way to move the center pointer to a specific x,y,z coordinate?

[Alejandro Virrueta]

Does anyone knowhow to move the center pointer to a specific x,y,z
coordinate? Or to place some kind of marker at a specific x,y,z coordinate?

Thanks,
Alex

[ccp4bb] Coot: get map mean, sigma, max, min from make-and-draw-map

[Alejandro Virrueta]

Hi,

Is there a way to make the function 'make-and-draw-map' return the values
of the map mean, sigma, max, and min?

I invoke this function in a python script, and the map values are printed
to the command line. However, I would like my python script to access these
values in order to set up some parameters for other functions downstream.
Any ideas?

I have tried stuff with sys.stdout, but it doesn't seem to work. And piping
the output to a file from a bash script (i.e. ${cootDir}coot --no-graphics
--no-state-script --no-guano -s coot_script_peaks_holes.py > output.file)
and parsing it is not what I am looking for.

Cheers,
Alex

[ccp4bb] mtz map data

[Alejandro Virrueta]

Hello,

I am new to crystallography refinement, and I have a question (I'm sorry in
advance if it is a stupid one):

Is it possible to extract all the density values (observed and
model-computed) from an mtz file? I need this information in order to
quantify the volumes of the difference regions (peaks and holes).

Thanks,
Alex