Re: [ccp4bb] Smallest crystal used for a whole dataset (at a synchrotron!)

2013-10-11 Thread Danny Axford
Hi Oliver,
Have a look at the viral polyhedra work:
Coulibaly, F., et al., The molecular organization of cypovirus 
polyhedra. Nature, 2007. 446(7131): p. 97-101.
Coulibaly, F., et al., The atomic structure of baculovirus 
polyhedra reveals the independent emergence of infectious crystals in DNA and 
RNA viruses. Proceedings of the National Academy of Sciences of the United 
States of America, 2009. 106(52): p. 22205-22210.
Ji, X., et al., How baculovirus polyhedra fit square pegs into 
round holes to robustly package viruses. Embo Journal, 2010. 29(2): p. 505-514.
The crystals are typically small; wild type ~5um^3; recombinant ~10um^3. 
Because these are readily produced with very consistent unit cell, merging 
multiple crystals makes sense and allows best accumulation of completeness and 
redundancy. It is possible to collect complete data from a single, large 
crystal but with significant radiation damage. These crystals have unusually 
low solvent content ~22% so could be regarded as not generally representative.

Cheers,
Danny


From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Oliver 
Zeldin
Sent: 11 October 2013 01:07
To: ccp4bb
Subject: [ccp4bb] Smallest crystal used for a whole dataset (at a synchrotron!)

Dear All,

I was wondering if anyone has a more up to date reference on the smallest 
crystal (fibrils not included!) that has been used to collect a whole dataset? 
Also, the smallest crystals used for a multi crystal approach? In both cases, 
not including any X-FEL structures.
I'm currently working off the citations in James Holton's 'A beginner's guide 
to radiation damage', but am sure that there must be a new record coming from 
the microfocus beamlines by now.
Cheers,
Oliver Zeldin
Brunger Lab
Stanford, CA



-- 

This e-mail and any attachments may contain confidential, copyright and or 
privileged material, and are for the use of the intended addressee only. If you 
are not the intended addressee or an authorised recipient of the addressee 
please notify us of receipt by returning the e-mail and do not use, copy, 
retain, distribute or disclose the information in or attached to the e-mail.

Any opinions expressed within this e-mail are those of the individual and not 
necessarily of Diamond Light Source Ltd. 

Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments 
are free from viruses and we cannot accept liability for any damage which you 
may sustain as a result of software viruses which may be transmitted in or with 
the message.

Diamond Light Source Limited (company no. 4375679). Registered in England and 
Wales with its registered office at Diamond House, Harwell Science and 
Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom

 









Re: [ccp4bb] small lysozyme crystals?

2011-07-27 Thread Danny Axford
As a bit of an aside, my current reference crystal of choice is a Germanium 
Oxide with a 51.3Ang cubic cell.
see here:
http://www.nature.com/nature/journal/v437/n7059/full/nature04097.html
It is much more raditation hard than protein so I can do repeated measurements 
in the synchrotron beam without radiation damage becoming a factor. It is also 
physically harder than protein crystal making it easy to break up into sizes of 
choice and there is no worry about keeping it optimally hydrated.

Cheers,
Danny

DLS I24 Micro-focus Beamline