Re: [ccp4bb] Joint CCP4-6.4.0 and ARP/wARP-7.4 Update
Hi,
I just installed the update using ccp4um.
All I get now is:
ccp4i
Def file /software/ccp4-6.4.0/share/ccp4i/etc/unix/configure.def
does not have correct file label configure
Def file /software/ccp4-6.4.0/share/ccp4i/etc/preferences.def.dist
does not have correct file label preferences
Error in startup script: can't read array(MAPVIEWER_DEFAULT): no such element
in array
while executing
set viewercmd $array(MAPVIEWER_DEFAULT)
(procedure set_default_mapviewer line 9)
invoked from within
set_default_mapviewer $arrayname
(preferences arm line 2)
invoked from within
switch -- $taskname {
directories {
catch {update_defdir_menu $arrayname}
} configure {
# We over-write the user TYPEDEF_LIST with...
(procedure InitialisePreferences line 113)
invoked from within
InitialisePreferences preferences preferences
(file /software/ccp4-6.4.0/share/ccp4i/bin/ccp4i.tcl line 128)
invoked from within
source [file join $env(CCP4I_TOP) bin ccp4i.tcl]
(file /software/ccp4-6.4.0/bin/ccp4i line 12)
What went wrong?
Am 06.11.2013 um 13:52 schrieb Andrey Lebedev andrey.lebe...@stfc.ac.uk:
Dear CCP4 Users
An update for the CCP4-6.4.0 series has just been released. This is the first
update for both CCP4 and ARP/wARP in tandem.
The ARP/wARP component of this update will be available to those Mac and
Linux users who have previously installed both packages via the CCP4 Package
manager or from the joint bundle downloaded from CCP4 web-site. A standalone
ARP/wARP package including the current update can be downloaded from the
EMBL-Hamburg site at www.arp-warp.orghttp://www.arp-warp.org/.
The following changes will be applied to the ARP/wARP installation:
• The use of non-crystallographic symmetry for protein chain tracing has been
enabled (it was accidentally disabled in version 7.4).
• The `SAD refinement protocol' (Murshudov et al 2011) has undergone many
fixes and now works well.
• The routine for ligand identification has been made faster and some small
bugs have been fixed.
• A few bugs have been fixed in the ARP/wARP installer and shell-specific
problems sometimes occurring on Linux should now be cured.
• The manual has been updated.
The following changes will be applied to the CCP4-6.4.0 installation:
• MrBUMP (all): a new option of model re-building after SHELXE; a fix for
phaser_sculptor dispatcher.
• Xia2 (windows): update to release 0.3.6.3 (fixes ctruncate issue).
• aimless (all): bug fixes.
• pointless (all): bug fixes.
• ViewHKL (all): additional visual control to enhance weak reflections and
bug fixes.
• truncate (Mac): Fixed harvesting option of old truncate.
• Molrep: New interface.
• Update (all): Increased maximum waiting time for background update check in
ccp4i.
Andrey Lebedev
--
Scanned by iCritical.
Mit freundlichen Grüßen
Joachim Reichelt
Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124
Braunschweig | www.helmholtz-hzi.de
Das HZI ist seit 2007 zertifiziertes Mitglied im audit berufundfamilie
Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe,
Bundesministerium für Bildung und Forschung
Stellvertreter: Rüdiger Eichel, Abteilungsleiter Niedersächsisches Ministerium
für Wissenschaft und Kultur
Geschäftsführung: Prof. Dr. Dirk Heinz; Dr. Michael Strätz
Gesellschaft mit beschränkter Haftung (GmbH)
Sitz der Gesellschaft: Braunschweig
Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] stereo monitor for DELL T7600
On Linux here the ASUS Monitor with build in Emitter runs fine even on a FX 380 Quadro without 3pin connection! Am 01.03.13 13:17, schrieb Andrew Purkiss: On Fri, 2013-03-01 at 12:52 +0100, mesters wrote: Why a quadro 4000? For coot, pymol, etc., a quadro 2000 is more than sufficient. Even the quadro 600 will do fine. Except for a linux installation, as the 3 pin bracket is only available on the Quadro 4000 (and higher) I noticed that the Nvidia linux driver has options for USB port etc. which suggests that in the near future USB ports can be used under linux for an external USB IR emitter. Can somebody comment on this please? The driver only seems to use the USB connection for power and for identifying that the emitter is connected. I don't think that there are any plans to use USB to drive the stereo synchronisation (the mention of USB has been in the release notes for many years now). -- Joachim Reichelt Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Das HZI ist seit 2007 zertifiziertes Mitglied im audit berufundfamilie Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: Rüdiger Eichel, Abteilungsleiter Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] stereo monitor for DELL T7600
What about the ASUS VG278HR Activ stereo with build in emitter, 27 in. Am 01.03.13 00:56, schrieb jlliu liu: Hi All, I am ordering a Dell workstation (Dell Precision,T7600n,MT,1300W) with 2GB nVIDIA Quadro 4000. Can anyone recommend to me which stereo monitor would be compatible with this model? I have some stereo models mentioned in previously ccp4bb email: - Zalman ZM-M215W 21.5in - Zalman ZM-M240W 24in - Samsunghttp://proteincrystallography.org/ccp4bb/message29933.html SyncMaster S27A750D 27in - LG D2342P 23in / LG D2542P 25in Any advice will be highly appreciated. Thanks so much in advance! Jl -- Joachim Reichelt Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Das HZI ist seit 2007 zertifiziertes Mitglied im audit berufundfamilie Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: Rüdiger Eichel, Abteilungsleiter Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] GeForce Graphics cards
Yes, we have this monitor running fine on a Quadro FX 380. Stereo is perfect using coot, pymol and many other SW. [2262774.741] (==) NVIDIA(0): Using gamma correction (1.0, 1.0, 1.0) [2262774.741] (**) NVIDIA(0): Option Stereo 10 [2262774.741] (**) NVIDIA(0): Option MetaModeOrientation clone [2262774.741] (**) NVIDIA(0): USB IR emitter stereo requested [2262774.741] (**) NVIDIA(0): Enabling 2D acceleration [2262775.874] (II) NVIDIA(GPU-0): Display (Ancor Communications Inc ASUS VG278HR (DFP-0)) [2262775.875] (II) NVIDIA(GPU-0): supports NVIDIA 3D Vision stereo. [2262775.997] (II) NVIDIA(0): NVIDIA GPU Quadro FX 380 (G96GL) at PCI:1:0:0 (GPU-0) Am 14.02.13 10:55, schrieb Chris Richardson: On the subject of nVidia graphics cards, linux and stereo, I feel I ought to mention the Asus VG278H. This is a 120Hz 27 1920x1080 monitor with a built-in nVidia 3D vision emitter, which comes bundled with a pair of 3D vision glasses. The great thing about the built-in emitter is that it takes stereo synch from the DVI cable even under Linux. This removes the need for a Quadro card with a 3-pin mini-DIN connector or 3-pin adapter. Here in the UK our cheapest supplier was selling it for £380 ex. VAT. There is little information about using it with Linux on the web, but as I understand it you still need a Quadro card. I got it running with little trouble using a Quadro 2000, Ubuntu 12.04 LTS and the latest nVidia drivers. It may be possible to use cheaper Quadro cards. The picture and stereo quality is excellent when compared to our existing stereo systems. Chris -- Dr Chris Richardson :: Sysadmin, structural biology, icr.ac.ukhttp://icr.ac.uk/ The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP. This e-mail message is confidential and for use by the addressee only. If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network. -- Joachim Reichelt Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: Rüdiger Eichel, Abteilungsleiter Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] Zalman displays and Macs?
I got the same trouble and got it fixed: Contact Zalman e.g. at j...@zalman.co.kr I got this answer: Dear Joachim, I apologize for the delay in responding to your inquiry. I was away on multiple business trips abroad, and was terribly occupied. I can provide the fix – a custom DVI cable specifically for the ZM-M220W. It resolves the issue of the swapped pins 15 16 of the ZM-M220W, which is not an issue with older graphic cards/GPUs(I infact use the DVI connection with my office PC that has an Nvidia GeForce 7600 card), but is an issue with newer / notebook GPUs. Basically, newer GPUs seem to have acquired a function that actively sends and receives a signal to and from the monitor to check if a connection is made, and if it does not get a return signal that it is looking for, the GPU’s output shuts down. With the ZM-M220W’s swapped pins 15 16, the newer GPUs don’t get the return signal and thinks that no monitor is connected and shuts the output off. On older GPUs, this function is not common and so the GPU outputs constantly without regarding for the pins 15 16. Okay, so please fill out the following FedEx Air Waybill template and send it to me, and I will have this custom DVI cable sent to you. Recipient's Name: Phone: + Company: Address: Address: City: State/Province: Country: ZIP/Postal Code: Am 22.09.11 11:58, schrieb Adrian Goldman: Hi, Anybody having problems with Zalmans and the newer macs? We can't get the MACS to even _recognise_ the existence of the Zalman display using a minidisplay port -DVI adapter and also using Thunderbolt out on a new iMAC (minidisplay port) -- DVI adapter. This is a real problem if one wants to do stereo on MACS... thanks for comment and advice... Adrian Goldman -- Joachim Reichelt Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: MinDirig Heiko Gevers, Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] hkl2map on Mac OSX 10.6
Just a hint: Subshels do not always use aliases, so put shelx etc. in your path e.g. in /usr/local/bin Am 15.07.11 11:40, schrieb Sebastiano Pasqualato: Hi all, has anybody managed to have hkl2map running on an intel-based Mac? I have downloaded and installed the shelx programs, which I have aliased in my .bashrc, and will run from the command line. I also have downloaded and aliased the 'wish hkl2map-0.2-dist' command, that does open hkl2map windows. However, when type hkl2map, I get this: ... Any ideas on how to solve the problem? Thanks a lot in advance, best, s -- Sebastiano Pasqualato, PhD Crystallography Unit IFOM-IEO Campus Cogentech - Consortium for Genomic Technologies via Adamello, 16 20139 - Milano Italy tel +39 02 9437 5172 fax +39 02 9437 5990 -- Joachim Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: MinDirig Heiko Gevers, Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz; Ulf Richter, MBA Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477
Re: [ccp4bb] MacBookPro problems
Hi all, the problem for Zalman monitor to newer MACs etc. is : From Zalman ( j...@zalman.co.kr ) I got this Mail: I can provide the fix – a custom DVI cable specifically for the ZM-M220W. It resolves the issue of the swapped pins 15 16 of the ZM-M220W, which is not an issue with older graphic cards/GPUs(I infact use the DVI connection with my office PC that has an Nvidia GeForce 7600 card), but is an issue with newer / notebook GPUs. Basically, newer GPUs seem to have acquired a function that actively sends and receives a signal to and from the monitor to check if a connection is made, and if it does not get a return signal that it is looking for, the GPU’s output shuts down. With the ZM-M220W’s swapped pins 15 16, the newer GPUs don’t get the return signal and thinks that no monitor is connected and shuts the output off. On older GPUs, this function is not common and so the GPU outputs constantly without regarding for the pins 15 16. ... Jihoon Jihoon Jo Manager, 3D Business Development Zalman Tech Co., Ltd. #1007 Daeryung Techno Town III 448 Gasan-dong, Gumchun-gu Seoul, 153-803, Korea Tel : +82-2-2107-3109 Fax: +82-2-2107-3322 So I'l get a new DVI cable. -- Joachim
Re: [ccp4bb] MacBookPro problems
Hi Jürgen, the Zalman is o.k. on a Nvidia 380. I just wrote an email to the vendor. Am 23.04.10 17:43, schrieb Jürgen Bosch: Yeah, send your Zalman vendor a nice email and let them exchange your DVI adapter. Had that problem too - alternatively you can scavenge one DVI adapter from another computer and test it. I wouldn't be surprised if it works, that's how I figured it out. Jürgen On Apr 23, 2010, at 9:37 AM, Joachim Reichelt wrote: Dear all, I just got a MacBookPro. I have two questions: How to get the keyboard shortcuts in coot or pymol up, e.g. altF to open the file dialog. and whenever I connect a zalman 220 (stereo ready) monitor to the mac using a miniDisplayPort to DVI adapter, the monitor is not recognized and so it is completely dark. The Mac does not show the monitor in the dialogues but an error message. -- Joachim - Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/ --
[ccp4bb] MacBookPro problems
Dear all, I just got a MacBookPro. I have two questions: How to get the keyboard shortcuts in coot or pymol up, e.g. altF to open the file dialog. and whenever I connect a zalman 220 (stereo ready) monitor to the mac using a miniDisplayPort to DVI adapter, the monitor is not recognized and so it is completely dark. The Mac does not show the monitor in the dialogues but an error message. -- Joachim
Re: [ccp4bb] attachments
=3D is the escaped = =xx were is the hex code of any 8bit char Am 15.09.2009 11:46, schrieb Phil Evans: There are two problems, I think 1. Sending a simple mail like this in anything other than plain text is wasteful, and also enforces the sender's way of displaying it on the reader, rather than following the reader's preference. (That may of course be appropriate in some cases where formatting is important, but not in this context) 2. Messages such as Norman's (and others), which seem to come from Outlook Express or Exchange Server, specify a font size 3D2 (whatever that means) which comes out too small to read, at least for me The html line is:- PFONT SIZE=3D2 FACE=3DArial Luddite What's wrong with plain text? /Luddite Phil On 15 Sep 2009, at 10:34, Ian Tickle wrote: Phil I had this same problem a while ago, if you recall. Modern e-mail clients sending a message in HTML format will almost certainly send it in 2 parts, the first a version converted to plain text and the second the original HTML version (and possibly other versions of the same message). This is the 'MIME multipart alternative' e-mail standard which is designed so that e-mail clients or users reading the message can choose the version they want to display. To quote from http://en.wikipedia.org/wiki/MIME#Alternative : Systems can then choose the best representation they are capable of processing; in general, this will be the last part that the system can understand. So assuming your mail client is MIME-compatible (I would have thought that all modern clients are) there should be an option on your mail reader (as there is on mine) to always display the plain text version. Cheers -- Ian -Original Message- From: owner-ccp...@jiscmail.ac.uk [mailto:owner-ccp...@jiscmail.ac.uk] On Behalf Of Phil Evans Sent: 15 September 2009 09:59 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] attachments while we're on this topic, it would be nice also if messages were sent in plain text, not as html (like yours, Norman :-)), particularly as these ones generally come out in a tiny font in my (Apple) mail reader, for some reason Phil On 15 Sep 2009, at 09:45, Stein, Norman (STFC,DL,CSE) wrote: In the past month there have been several postings to the BB with large (100kB or more) attachments. Can I remind subscribers that it is our policy to discourage attachments as, amongst other things, they can cause mailboxes to fill at an alarming rate. A link to a website carrying the data which would otherwise appear in the attachment, is more appropriate. Norman Stein CCP4 -- Scanned by iCritical. Disclaimer This communication is confidential and may contain privileged information intended solely for the named addressee(s). It may not be used or disclosed except for the purpose for which it has been sent. If you are not the intended recipient you must not review, use, disclose, copy, distribute or take any action in reliance upon it. If you have received this communication in error, please notify Astex Therapeutics Ltd by emailing i.tic...@astex-therapeutics.com and destroy all copies of the message and any attached documents. Astex Therapeutics Ltd monitors, controls and protects all its messaging traffic in compliance with its corporate email policy. The Company accepts no liability or responsibility for any onward transmission or use of emails and attachments having left the Astex Therapeutics domain. Unless expressly stated, opinions in this message are those of the individual sender and not of Astex Therapeutics Ltd. The recipient should check this email and any attachments for the presence of computer viruses. Astex Therapeutics Ltd accepts no liability for damage caused by any virus transmitted by this email. E-mail is susceptible to data corruption, interception, unauthorized amendment, and tampering, Astex Therapeutics Ltd only send and receive e-mails on the basis that the Company is not liable for any such alteration or any consequences thereof. Astex Therapeutics Ltd., Registered in England at 436 Cambridge Science Park, Cambridge CB4 0QA under number 3751674 -- Joachim
[ccp4bb] dog slow ccp4i on 64 OpenSUSE and home is on NFS
Dear all,
we have a real slow performance of ccp4i, if:
- homedir is on NFS, here /nero is on a i586 Linux system
- actual system is 64 bit, here OpenSUSE 10.3 on core2quad with 8GB ram
from entering ccp4i to see the gui it takes ~2 minutes.
and any popup/dialogue take the same time
This is 6.1, was the same with 6.02
Same user, same system, home dir shifted to a local disk or
same home, user, but i586 (P4, 1GB) some seconds
I have done an strace to see what is going on and I see a lot of:
lstat(/nero/jre, {st_mode=S_IFDIR|0755, st_size=6336, ...}) = 0
lstat(/nero/jre/.CCP4, {st_mode=S_IFDIR|0755, st_size=248, ...}) = 0
access(/nero/jre/.CCP4/dbccp4i.LOCK, F_OK) = -1 ENOENT (No such file
or directory)
select(0, NULL, NULL, NULL, {0, 1}) = 0 (Timeout)
access(/nero/jre/.CCP4/dbccp4i.LOCK, F_OK) = -1 ENOENT (No such file
or directory)
select(0, NULL, NULL, NULL, {0, 1}) = 0 (Timeout)
access(/nero/jre/.CCP4/dbccp4i.LOCK, F_OK) = -1 ENOENT (No such file
or directory)
select(0, NULL, NULL, NULL, {0, 1}) = 0 (Timeout)
access(/nero/jre/.CCP4/dbccp4i.LOCK, F_OK) = -1 ENOENT (No such file
or directory)
select(0, NULL, NULL, NULL, {0, 1}) = 0 (Timeout)
access(/nero/jre/.CCP4/dbccp4i.LOCK, F_OK) = -1 ENOENT (No such file
or directory)
select(0, NULL, NULL, NULL, {0, 1}) = 0 (Timeout)
... (32 times repeated)
open(/nero/jre/.CCP4/dbclientapi.log, O_WRONLY|O_CREAT|O_APPEND, 0666) = 4
fcntl(4, F_SETFD, FD_CLOEXEC) = 0
ioctl(4, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff1d624760) = -1 ENOTTY
(Inappropriate ioctl for device)
lseek(4, 0, SEEK_END) = 351
write(4, db_get_handler_port: opening loc..., 38) = 38
close(4)= 0
open(/nero/jre/.CCP4/dbccp4i.LOCK, O_RDONLY) = 4
fcntl(4, F_SETFD, FD_CLOEXEC) = 0
ioctl(4, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff1d6250f0) = -1 ENOTTY
(Inappropriate ioctl for device)
read(4, port number is:4090, 4096)= 19
read(4, , 4077) = 0
lstat(/nero, {st_mode=S_IFDIR|0755, st_size=1992, ...}) = 0
lstat(/nero/jre, {st_mode=S_IFDIR|0755, st_size=6336, ...}) = 0
lstat(/nero/jre/.CCP4, {st_mode=S_IFDIR|0755, st_size=280, ...}) = 0
open(/nero/jre/.CCP4/dbclientapi.log, O_WRONLY|O_CREAT|O_APPEND, 0666) = 5
fcntl(5, F_SETFD, FD_CLOEXEC) = 0
ioctl(5, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff1d624760) = -1 ENOTTY
(Inappropriate ioctl for device)
lseek(5, 0, SEEK_END) = 389
write(5, db_get_handler_port: line from l..., 63) = 63
...
lstat(/nero/jre/.CCP4, {st_mode=S_IFDIR|0755, st_size=280, ...}) = 0
open(/nero/jre/.CCP4/dbclientapi.log, O_WRONLY|O_CREAT|O_APPEND, 0666) = 6
fcntl(6, F_SETFD, FD_CLOEXEC) = 0
ioctl(6, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff1d624820) = -1 ENOTTY
(Inappropriate ioctl for device)
lseek(6, 0, SEEK_END) = 8764
write(6, db_handler_processResponse: invo..., 54) = 54
close(6)= 0
lstat(/nero, {st_mode=S_IFDIR|0755, st_size=1992, ...}) = 0
lstat(/nero/jre, {st_mode=S_IFDIR|0755, st_size=6336, ...}) = 0
lstat(/nero/jre/.CCP4, {st_mode=S_IFDIR|0755, st_size=280, ...}) = 0
open(/nero/jre/.CCP4/dbclientapi.log, O_WRONLY|O_CREAT|O_APPEND, 0666) = 6
fcntl(6, F_SETFD, FD_CLOEXEC) = 0
ioctl(6, SNDCTL_TMR_TIMEBASE or TCGETS, 0x7fff1d624820) = -1 ENOTTY
(Inappropriate ioctl for device)
lseek(6, 0, SEEK_END) = 8818
write(6, *** REQUEST_LIST: request#9\n, 28) = 28
close(6)= 0
and I see a lot of:
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN (Resource
temporarily unavailable)
read(3, 0x61df94, 4096) = -1 EAGAIN
Re: [ccp4bb] xds and Saturn troubles
As we have the 944 here too, can someone "publish" the XDS.INP template. What are the real values for QX and QY? Are it realy 0.045 resp. 0.08 in 2x2 binned mode? NX=1042 NY=1042 QX=0.0900 QY=0.0900 Ken Johnson wrote: Jan, Wolfgang Kabsch fixed this problem for us as of July 14 at least for the linux version - just download and reinstall (XDS-linux_ifc_Intel+AMD.tar.gz). Ken Quoting Jan Abendroth [EMAIL PROTECTED]: Hi all, a bit off-topic, but maybe someone knows an answer. I am trying to run xds on data collected on our new sparkling Saturn detector. Using the basic xds script that worked beautifully for older Saturn94 detectors, xds now dies with the following error message during the INIT phase: !!! ERROR !!! ILLEGAL RAXIS_COMPRESSION_RATIO Any ideas what this might be? Thanks a lot Jan -- Jan Abendroth deCODE biostructures Seattle / Bainbridge Island WA, USA work: JAbendroth_at_decode.is home: Jan.Abendroth_at_gmail.com --
