Re: [ccp4bb] pymol crashes un ubuntu 8.10
Hi, I think that this is related to general pymol problem in ubuntu 8.10. We had exchanged couple emails with Warren about this but I have not heart back from him since. It seems that there is a bug in pymol or Tkinter library and whenever pymol tries to open special kind of window it crashes with segfault. (try to open Help - About Pymol) (that bug is present in both python 2.4 an 2.5 and none of pymol versions works.) see also https://lists.ubuntu.com/archives/universe-bugs/2008-November/019193.html Witek Pete Meyer wrote: Two suggestions... Check that the coordinate fields in your pqr file are separated by spaces (some pdb to pqr converters don't always do this in my hands, probably due to large negative coordinate values). Also, try using your .pqr file and .in file to run apbs from the command line and see if it segfaults there. Pete Talavera wrote: Hi there, Whenever I tried in Pymol to load the .pqr file to represent the electrostatic surface the program crashes with Segmentation fault. I am using a laptop with Ubuntu 8.10. Does any of you have any suggestion for this problem. Thanks a lot in advanced. Ariel * Ariel Talavera Perez, PhD Center of Molecular immunology calle 216 esq. A 15, Atabey, Playa Havana 11600, CUBA email: talav...@cim.sld.cu *
[ccp4bb] problem with ccp4 6.1.0 installation
Hello, After installation I tried Graphical View of Project and I got: dotgraph_render: error: graph 1.000 5.861 0.528 node Job1 0.472 0.264 0.945 0.500 1: autoSHARP\nautoSHARP filled box black #9DD05B node Job2 1.667 0.264 0.945 0.500 2: autoSHARP\nautoSHARP filled box black #9DD05B node Job3 3.194 0.264 1.611 0.511 3: refmac5\nRestrained refinement using\nisotropic B factors filled box black #9DD05B node Job4 5.056 0.264 1.611 0.511 4: refmac5\nRestrained refinement using\nisotropic B factors filled box black #9DD05B stop Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font Error: Could not find/open font --- Anyone had simmilar problem? What and where the font should be? Thanks, Witek
[ccp4bb] postdoctoral position at the Salk Institute
We would like to invite applications for postdoctoral position in Prof. Senyon Choe's Structural Biology Laboratory at The Salk Institute (http://sbl.salk.edu/~choe) to study structures of membrane proteins. Strong background in membrane protein biochemistry is required. Those interested should send CV to [EMAIL PROTECTED] or directly to [EMAIL PROTECTED]
