Dear all,
I would like to compile the CCP4 in mac book pro with intel cpu. The purpose
of installing ccp4 using source code is to compile the clipper library.
Although I have already installed ccp4 dmg package provided for mac os, I
could not compile the clipper using ccp4. The problem occurred due to the
g77 fortran library and detail error message is shown below. I have only
gfortran as default provided by gnu for Mac OS. I also installed g77 manual
but my problem is not still solved.
Do you know the solution of this problem?
Here is error while configure
checking for Fortran 77 libraries... rm: conftest.dSYM: is a directory
-lcrt1.10.5.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../..
-lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm
checking for dummy main to link with Fortran libraries... rm: conftest.dSYM:
is a directory
unknown
configure: error: linking to Fortran libraries from C fails
See `config.log' for more details.
Inside config.log
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i386-apple-darwin11.2.0
ac_cv_build_alias=i386-apple-darwin11.2.0
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-O2 -DGFORTRAN -DPROTOTYPE'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=g++
ac_cv_env_F77_set=set
ac_cv_env_F77_value=gfortran
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_f77_compiler_gnu=yes
ac_cv_f77_dummy_main=unknown
ac_cv_flibs=' -lcrt1.10.5.o
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../..
-lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm'
ac_cv_fortran_dummy_main=unknown
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i386-apple-darwin11.2.0
ac_cv_host_alias=i386-apple-darwin11.2.0
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_CC=gcc
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_PERL=perl
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_cxx_g=yes
ac_cv_prog_egrep='grep -E'
ac_cv_prog_f77_g=yes
ac_cv_prog_f77_v=-v
ac_cv_prog_gcc_2_90=yes
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
lt_cv_path_LDCXX=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
lt_cv_path_NM=/usr/bin/nm
lt_cv_path_SED=/usr/bin/sed
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_gnu_ld=no
lt_cv_prog_gnu_ldcxx=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[
]\([BCDEGRST][BCDEGRST]*\)[ ][
]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/
{\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/
{"\2", (lt_ptr) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int
\1;/p'\'''
lt_cv_sys_max_cmd_len=196608
lt_lt_cv_prog_compiler_c_o='"yes"'
lt_lt_cv_prog_compiler_c_o_CXX='"yes"'
lt_lt_cv_prog_compiler_c_o_F77='"yes"'
lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[
]\\([BCDEGRST][BCDEGRST]*\\)[ ][
]*_\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 _\\2 \\2/p'\''"'
lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^
]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\)
\\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"'
lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .*
\\(.*\\)\$/extern int \\1;/p'\''"'
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run
aclocal-1.9'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run tar'
AR='ar'
AUTOCONF='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run
autoconf'
AUTOHEADER='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run
autoheader'
AUTOMAKE='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run
automake-1.9'
AWK='awk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-O2 -DGFORTRAN -DPROTOTYPE'
CPP='gcc -E'
CPPFLAGS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
ECHO='/bin/echo'
ECHO_C='ECHO_N=''
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
F77='gfortran'
FFLAGS='-g -O2'
FFTW_MPI_INCLUDELIST=''
FFTW_MPI_LIBLIST=''
FFTW_MPI_PROGLIST=''
FFTW_PREFIX1='xyz'
FFTW_PREFIX=''
FFTW_THREADS_INCLUDELIST=''
FFTW_THREADS_LIBLIST=''
FFTW_THREADS_PROGLIST=''
FLIBS=' -lcrt1.10.5.o
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../..
-lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm'
INSTALL_DATA='cp -p'
INSTALL_PROGRAM='cp -p'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL}
/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run
makeinfo'
MPICC=''
MPILIBS=''
OBJEXT='o'
PACKAGE='fftw'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
PERL='perl'
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHARED_VERSION=''
SHARED_VERSION_INFO='2:7:0'
SHELL='/bin/sh'
STRIP='strip'
THREADLIBS=''
VERSION='2.1.5'
ac_ct_AR='ar'
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_RANLIB='ranlib'
ac_ct_STRIP='strip'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/bin'
build='i386-apple-darwin11.2.0'
build_alias=''
build_cpu='i386'
build_os='darwin11.2.0'
build_vendor='apple'
datadir='${prefix}/share'
exec_prefix='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1'
host='i386-apple-darwin11.2.0'
host_alias=''
host_cpu='i386'
host_os='darwin11.2.0'
host_vendor='apple'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/instal
l-sh'
libdir='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='$(mkinstalldirs)'
oldincludedir='/usr/include'
prefix='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define FFTW_ENABLE_FLOAT 1
#define HAVE_DLFCN_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define PACKAGE "fftw"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define STDC_HEADERS 1
#define VERSION "2.1.5"
#endif
#ifdef __cplusplus
extern "C" void exit (int);
configure: exit 1
