Folks - the phenixbb is nice and lively. And you get answers asap. Use
it for at least in cases like this were it's basically a bug report
and not a scientific question.
Sent from my iPhone
On 24 Apr 2010, at 12:01, Rajan wrote:
Dear All
Greetings
I was searching for a ligand present in the active site of my
protein using Ligand Search in "PHENIX"
but i stuck in between with an error :
A Python error was detected. This may be a problem with the program
settings, an error in your data, or a bug; click "OK" to send a bug
report to the PHENIX developers.
AttributeError : ligand_identification instance has no attribute
'connections'
Traceback:
File "/home/programs/linux/phenix-1.6.1-357/cctbx_project/libtbx/
thread_utils.py", line 137, in run
return_value = self._target(self._args, self._kwargs, self._c)
File "/home/programs/linux/phenix-1.6.1-357/cctbx_project/libtbx/
runtime_utils.py", line 55, in __call__
result = self.target()
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/
command_line/ligand_identification.py", line 1769, in __call__
identify_ligands = ligand_identification(args=list(self.args),
quiet=False)
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/
command_line/ligand_identification.py", line 308, in __init__
ligand_identification.Run(self, params)
File "/home/programs/linux/phenix-1.6.1-357/phenix/phenix/
command_line/ligand_identification.py", line 1454, in Run
return self.connections['STOP ']
I am not able to identify the problem?
Please let me know if some one can identify the problem, i don't
know whether it is a bug or problem in my files.
Thanks for your suggestions in advance.
Rajan
--
Current Address:
Rajan Vyas
Research Scholar
Deptt. of Biotechnology
Panjab University Chandigarh, India
160014Mob. +919417374197
Fax: +91-172-2625254
