Re: [ccp4bb] RMSF calculation in pymol
Dear Dhiraj, What is the script? What is the error? Please send them to us. We may be able to fix the script - it is not easy to help without knowing the script and error. Cheers, Martin On Thu, 2023-12-14 at 21:41 +, Srivastava, Dhiraj wrote: > Hi All > sorry for off topic question. does anyone have script for > rmsf calculation of multistate pdb file in pymol? There used to be a > script rmsf_states written by Robert Campbell but with newer version > of pymol, it's not working. > > Thank you > Dhiraj > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] RMSF calculation in pymol
Hi Not PyMol, but relevant to the ccp4BB - why not try “gesamt” for this? e.g. for the nmr structure 1q01 - > gesamt pdb1q01.ent -s '/1/A' pdb1q01.ent -s '/2/A' pdb1q01.ent -s '/3/A' > -r0=1.5 -sigma=1.0 -o 1q01_cluster.cif -o-cf -a align.seq gives me an alignment of the first three models in the file Harry > On 14 Dec 2023, at 21:55, Krieger, James M wrote: > > I don’t have one for pymol, but there is a function in prody for it. > > Best wishes > James > >> On 14 Dec 2023, at 21:41, Srivastava, Dhiraj >> wrote: >> >> >> Hi All >> sorry for off topic question. does anyone have script for rmsf >> calculation of multistate pdb file in pymol? There used to be a script >> rmsf_states written by Robert Campbell but with newer version of pymol, >> it's not working. >> >> Thank you >> Dhiraj >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] RMSF calculation in pymol
I don’t have one for pymol, but there is a function in prody for it. Best wishes James On 14 Dec 2023, at 21:41, Srivastava, Dhiraj wrote: Hi All sorry for off topic question. does anyone have script for rmsf calculation of multistate pdb file in pymol? There used to be a script rmsf_states written by Robert Campbell but with newer version of pymol, it's not working. Thank you Dhiraj To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] RMSF calculation in pymol
Hi All sorry for off topic question. does anyone have script for rmsf calculation of multistate pdb file in pymol? There used to be a script rmsf_states written by Robert Campbell but with newer version of pymol, it's not working. Thank you Dhiraj To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
