Re: [ccp4bb] Wilson B-factors recorded for all PDB's to 3.5Å
Polygon in the validation tools of phenix. On Saturday, October 15, 2016, amit sharma < 0d1d6aa5c57b-dmarc-requ...@jiscmail.ac.uk> wrote: > Hi, > > What is the average Wilson B-factor for all single crystal protein > structures deposited in PDB at 3.5Å? Is there any software or a publication > which could provide such an estimate? > > Thanks, > > Amit >
Re: [ccp4bb] Wilson B-factors recorded for all PDB's to 3.5Å
Hi Amit, you will find the answer on page 47 here: https://www.phenix-online.org/presentations/latest/pavel_validation.pdf Pavel On Sat, Oct 15, 2016 at 7:38 AM, amit sharma < 0d1d6aa5c57b-dmarc-requ...@jiscmail.ac.uk> wrote: > Hi, > > What is the average Wilson B-factor for all single crystal protein > structures deposited in PDB at 3.5Å? Is there any software or a publication > which could provide such an estimate? > > Thanks, > > Amit >
Re: [ccp4bb] Wilson B-factors recorded for all PDB's to 3.5Å
Hi Amit, Calculating the Wilson B at that resolution becomes a bit iffy. So I would be a bit careful with drawing any conclusions from it. We have the numbers calculated by sfcheck for the pdb_redo databank. Cheers, Robbie Sent from my Windows 10 phone Van: amit sharma<mailto:0d1d6aa5c57b-dmarc-requ...@jiscmail.ac.uk> Verzonden: zaterdag 15 oktober 2016 16:38 Aan: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Onderwerp: [ccp4bb] Wilson B-factors recorded for all PDB's to 3.5Å Hi, What is the average Wilson B-factor for all single crystal protein structures deposited in PDB at 3.5Å? Is there any software or a publication which could provide such an estimate? Thanks, Amit
[ccp4bb] Wilson B-factors recorded for all PDB's to 3.5Å
Hi, What is the average Wilson B-factor for all single crystal protein structures deposited in PDB at 3.5Å? Is there any software or a publication which could provide such an estimate? Thanks, Amit
