Re: [ccp4bb] error after install
Hi Tim, $ stat /opt/CCP4/Python-2.6.7/bin/python File: `/opt/CCP4/Python-2.6.7/bin/python' Size: 4279369 Blocks: 8360 IO Block: 4096 regular file Device: 801h/2049d Inode: 1189874 Links: 2 Access: (0755/-rwxr-xr-x) Uid: (13003/ UNKNOWN) Gid: (10602/ UNKNOWN) Access: 2011-09-26 09:11:48.946003302 +1300 Modify: 2011-08-16 02:26:38.0 +1200 Change: 2011-09-22 16:24:09.857165116 +1200 It maybe that python was not installed correctly, will update after the core group gets back to me. Cheers Joel _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 -Original Message- From: Tim Gruene [mailto:t...@shelx.uni-ac.gwdg.de] Sent: Friday, 23 September 2011 8:26 p.m. To: Joel Tyndall Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] error after install -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Joel, reinstalling operating systems is fairly common also to other ones than linux ;-) The behaviour of the command 'ccp4' is actually correct for it is aliased to tg@shelx8:/xtal/Suites/CCP4/ccp4-6.2.0$ type -all ccp4 ccp4 is aliased to `pushd $CCP4/dev/null' I suppose you mean 'ccp4i' instead in order to start the CCP4 interface. About the python: What is the output of the command stat /opt/CCP4/Python-2.6.7/bin/python Maybe you do not have executable permission. Tim On 09/23/2011 12:29 AM, Joel Tyndall wrote: Hi folks, My love/hate relationship continues with linux. I have had to reinstall everything and when I install CCP4 6.2.0 It seems to work fine but upon opening a shell I get the error below and by typing ccp4 I simply get changed to the ccp4 directory. *** Fatal Error: Incomplete libtbx environment\! *** Please re-run the libtbx/configure.py command. On a little searching I found some evidence of this error before but little solutions to the problem. When I run: python configure.py I get the error bash: /opt/CCP4/Python-2.6.7/bin/python: No such file or directory This file does exist. I am running Ubuntu 10.10 as a guest on a windows 7 machine. I am running in a bash shell. This error occurs when nothing else is installed. The libtx/configure.py is in three places /opt/CCP4/ccp4-6.2.0/lib/cctbx-utf/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/lib/cctbx/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/src/phaser/phaser-2.3.0/libtx I recently installed CCP4 6.1.12 with no issues. Any help to solve this problem would be much appreciated Joel _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOfEKOUxlJ7aRr7hoRAjDSAJsHVlJPFlBHxNmWty1NfvTz46pWzACg3QUk D4wNrN3iLTd/JFE4x1s0+rE= =BhZt -END PGP SIGNATURE-
Re: [ccp4bb] error after install
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Joel, reinstalling operating systems is fairly common also to other ones than linux ;-) The behaviour of the command 'ccp4' is actually correct for it is aliased to tg@shelx8:/xtal/Suites/CCP4/ccp4-6.2.0$ type -all ccp4 ccp4 is aliased to `pushd $CCP4/dev/null' I suppose you mean 'ccp4i' instead in order to start the CCP4 interface. About the python: What is the output of the command stat /opt/CCP4/Python-2.6.7/bin/python Maybe you do not have executable permission. Tim On 09/23/2011 12:29 AM, Joel Tyndall wrote: Hi folks, My love/hate relationship continues with linux. I have had to reinstall everything and when I install CCP4 6.2.0 It seems to work fine but upon opening a shell I get the error below and by typing ccp4 I simply get changed to the ccp4 directory. *** Fatal Error: Incomplete libtbx environment\! *** Please re-run the libtbx/configure.py command. On a little searching I found some evidence of this error before but little solutions to the problem. When I run: python configure.py I get the error bash: /opt/CCP4/Python-2.6.7/bin/python: No such file or directory This file does exist. I am running Ubuntu 10.10 as a guest on a windows 7 machine. I am running in a bash shell. This error occurs when nothing else is installed. The libtx/configure.py is in three places /opt/CCP4/ccp4-6.2.0/lib/cctbx-utf/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/lib/cctbx/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/src/phaser/phaser-2.3.0/libtx I recently installed CCP4 6.1.12 with no issues. Any help to solve this problem would be much appreciated Joel _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFOfEKOUxlJ7aRr7hoRAjDSAJsHVlJPFlBHxNmWty1NfvTz46pWzACg3QUk D4wNrN3iLTd/JFE4x1s0+rE= =BhZt -END PGP SIGNATURE-
[ccp4bb] error after install
Hi folks, My love/hate relationship continues with linux. I have had to reinstall everything and when I install CCP4 6.2.0 It seems to work fine but upon opening a shell I get the error below and by typing ccp4 I simply get changed to the ccp4 directory. *** Fatal Error: Incomplete libtbx environment\! *** Please re-run the libtbx/configure.py command. On a little searching I found some evidence of this error before but little solutions to the problem. When I run: python configure.py I get the error bash: /opt/CCP4/Python-2.6.7/bin/python: No such file or directory This file does exist. I am running Ubuntu 10.10 as a guest on a windows 7 machine. I am running in a bash shell. This error occurs when nothing else is installed. The libtx/configure.py is in three places /opt/CCP4/ccp4-6.2.0/lib/cctbx-utf/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/lib/cctbx/cctbx_sources/cctbx_project/libtx /opt/CCP4/ccp4-6.2.0/src/phaser/phaser-2.3.0/libtx I recently installed CCP4 6.1.12 with no issues. Any help to solve this problem would be much appreciated Joel _ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034
